[INFO] fetching crate rust-htslib 0.38.2... [INFO] testing rust-htslib-0.38.2 against master#b70888601af92f6cdc0364abab3446e418b91d36 for pr-86479 [INFO] extracting crate rust-htslib 0.38.2 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate rust-htslib 0.38.2 on toolchain b70888601af92f6cdc0364abab3446e418b91d36 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-4/source/.cargo/config [INFO] started tweaking crates.io crate rust-htslib 0.38.2 [INFO] finished tweaking crates.io crate rust-htslib 0.38.2 [INFO] tweaked toml for crates.io crate rust-htslib 0.38.2 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] dcecf21e4608d595ba342757dc34072068870496a24fc720c41a3072ad1a1528 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "dcecf21e4608d595ba342757dc34072068870496a24fc720c41a3072ad1a1528", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "dcecf21e4608d595ba342757dc34072068870496a24fc720c41a3072ad1a1528", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dcecf21e4608d595ba342757dc34072068870496a24fc720c41a3072ad1a1528", kill_on_drop: false }` [INFO] [stdout] dcecf21e4608d595ba342757dc34072068870496a24fc720c41a3072ad1a1528 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 143a188ea7a51f79f31970be28b45cf50a7b26c2e684b7370d1f1484b5aa0653 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "143a188ea7a51f79f31970be28b45cf50a7b26c2e684b7370d1f1484b5aa0653", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling jobserver v0.1.22 [INFO] [stderr] Compiling idna v0.2.3 [INFO] [stderr] Compiling form_urlencoded v1.0.1 [INFO] [stderr] Compiling cc v1.0.69 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling url v2.2.2 [INFO] [stderr] Compiling openssl-src v111.15.0+1.1.1k [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling openssl-sys v0.9.65 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.45+curl-7.78.0 [INFO] [stderr] Compiling hts-sys v2.0.1 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling thiserror-impl v1.0.26 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling thiserror v1.0.26 [INFO] [stderr] Compiling bio-types v0.12.0 [INFO] [stderr] Compiling rust-htslib v0.38.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 24s [INFO] running `Command { std: "docker" "inspect" "143a188ea7a51f79f31970be28b45cf50a7b26c2e684b7370d1f1484b5aa0653", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "143a188ea7a51f79f31970be28b45cf50a7b26c2e684b7370d1f1484b5aa0653", kill_on_drop: false }` [INFO] [stdout] 143a188ea7a51f79f31970be28b45cf50a7b26c2e684b7370d1f1484b5aa0653 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 52c48381cb46bd5bdb4c06bed3c8e246cf9e35725b4eadfeda5593e0e7e90576 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "52c48381cb46bd5bdb4c06bed3c8e246cf9e35725b4eadfeda5593e0e7e90576", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling pretty_assertions v0.6.1 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Compiling rust-htslib v0.38.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 13.47s [INFO] running `Command { std: "docker" "inspect" "52c48381cb46bd5bdb4c06bed3c8e246cf9e35725b4eadfeda5593e0e7e90576", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "52c48381cb46bd5bdb4c06bed3c8e246cf9e35725b4eadfeda5593e0e7e90576", kill_on_drop: false }` [INFO] [stdout] 52c48381cb46bd5bdb4c06bed3c8e246cf9e35725b4eadfeda5593e0e7e90576 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] eed084c9d5579af7cce022b899691824cd2c5bc196bcedb7991c83362605aee0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "eed084c9d5579af7cce022b899691824cd2c5bc196bcedb7991c83362605aee0", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rust_htslib-8940db3c4014d73f) [INFO] [stdout] [INFO] [stdout] running 118 tests [INFO] [stdout] test bam::buffer::tests::test_buffer ... ok [INFO] [stdout] test bam::ext::tests::spliced_reads ... ok [INFO] [stdout] test bam::ext::tests::test_reference_start_end ... ok [INFO] [stdout] test bam::ext::tests::test_introns ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar_parsing ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar_parsing_non_ascii_error ... ok [INFO] [stdout] test bam::record::tests::test_cigar_read_pos ... ok [INFO] [stdout] test bam::record::tests::test_cigar_string ... ok [INFO] [stdout] test bam::record::tests::test_clone ... ok [INFO] [stdout] test bam::ext::tests::test_infer_seq_len ... ok [INFO] [stdout] test bam::record::tests::test_flags ... ok [INFO] [stdout] test bam::tests::parse_from_sam ... ok [INFO] [stdout] test bam::tests::test_aux_array_partial_eq ... ok [INFO] [stdout] test bam::record::tests::test_cigar_parse ... ok [INFO] [stdout] test bam::tests::test_aux_scalars ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_toml ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_read_orientation_f1r2 ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "./test/bam2sam_out.sam" : Read-only file system [INFO] [stdout] test bam::tests::test_cigar_modes ... ok [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stdout] test bam::tests::test_aux_arrays ... ok [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes [INFO] [stdout] test bam::ext::tests::test_aligned_pairs ... ok [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stdout] test bam::tests::test_pileup ... ok [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 3 after 0 of 4 bytes [INFO] [stdout] test bam::tests::test_compression_level_conversion ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_block_pairs ... ok [INFO] [stdout] test bam::tests::test_rc_records ... ok [INFO] [stdout] test bam::tests::test_copy_template ... ok [INFO] [stdout] test bam::tests::test_bam_header_sync ... ok [INFO] [stdout] test bam::tests::test_indexde_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_read_against_sam ... ok [INFO] [stdout] test bam::tests::test_read_sam_header ... ok [INFO] [stdout] test bam::tests::test_seek ... ok [INFO] [stdout] test bam::tests::test_read ... ok [INFO] [stdout] test bam::tests::test_read_cram ... ok [INFO] [stdout] test bam::tests::test_read_indexed ... ok [INFO] [stdout] test bam::tests::test_set_qname2 ... ok [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stdout] test bam::tests::test_set_qname ... ok [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes [INFO] [stdout] test bam::tests::test_write ... ok [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 3 after 0 of 4 bytes [INFO] [stdout] test bam::tests::test_set_record ... ok [INFO] [stdout] test bam::tests::test_set_repeated ... ok [INFO] [stdout] test bam::tests::test_read_indexed_different_index_name ... ok [INFO] [stdout] test bam::ext::tests::test_get_cigar_stats ... ok [INFO] [stdout] test bam::tests::test_write_compression ... ok [INFO] [stdout] test bam::tests::test_write_cram ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions_full ... ok [INFO] [stdout] test bam::tests::test_remove_aux ... ok [INFO] [stdout] test bcf::record::tests::test_missing_float ... ok [INFO] [stdout] test bcf::record::tests::test_record_rlen ... ok [INFO] [stdout] test bcf::record::tests::test_record_has_filter_custom ... ok [INFO] [stdout] test bcf::record::tests::test_record_has_filter_pass_is_default ... ok [INFO] [stdout] test bcf::record::tests::test_record_clear ... ok [INFO] [stdout] test bcf::record::tests::test_record_push_filter ... ok [INFO] [stdout] test bcf::record::tests::test_record_end ... ok [INFO] [stdout] test bcf::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bcf::record::tests::test_vector_end_float ... ok [INFO] [stdout] test bcf::tests::test_alt_allele_dosage ... ok [INFO] [stdout] test bcf::record::tests::test_record_remove_filter ... ok [INFO] [stdout] test bcf::buffer::tests::test_buffer ... ok [INFO] [stdout] test bcf::tests::test_genotype_missing_allele_conversion ... ok [INFO] [stdout] test bcf::tests::test_fails_on_bam ... ok [INFO] [stdout] test bcf::tests::test_genotype_allele_conversion ... ok [INFO] [stdout] test bcf::record::tests::test_record_set_filters ... ok [INFO] [stdout] test bcf::tests::test_genotypes ... ok [INFO] [stdout] test bcf::tests::test_header_ids ... ok [INFO] [stderr] [W::vcf_parse] Contig '19' is not defined in the header. (Quick workaround: index the file with tabix.) [INFO] [stdout] test bcf::tests::test_header_samples ... ok [INFO] [stdout] test bcf::tests::test_missing ... ok [INFO] [stdout] test bcf::tests::test_header_records ... ok [INFO] [stdout] test bcf::tests::test_fetch ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag_number_a ... ok [INFO] [stdout] test bcf::tests::test_obs_cornercase ... ok [INFO] [stdout] test bcf::tests::test_fetch_open_ended ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag ... ok [INFO] [stdout] test bcf::tests::test_strings ... ok [INFO] [stdout] test bcf::tests::test_remove_headers ... ok [INFO] [stdout] test bcf::tests::test_svlen ... ok [INFO] [stdout] test bcf::tests::test_read ... ok [INFO] [stdout] test bcf::tests::test_fetch_all ... ok [INFO] [stdout] test bcf::tests::test_remove_alleles ... ok [INFO] [stdout] test bcf::tests::test_header_contigs ... ok [INFO] [stdout] test bcf::tests::test_header_info_types ... ok [INFO] [stdout] test bcf::tests::test_fetch_start_greater_than_last_vcf_pos ... ok [INFO] [stdout] test bgzf::tests::test_is_bgzip_plain ... ok [INFO] [stdout] test bcf::tests::test_write_various ... ok [INFO] [stdout] test bam::tests::test_idx_pileup ... ok [INFO] [stdout] test bcf::tests::test_synced_reader ... ok [INFO] [stdout] test bgzf::tests::test_open_gzip ... ok [INFO] [stdout] test bgzf::tests::test_open_bgzip ... ok [INFO] [stdout] test bcf::tests::test_synced_reader_fetch ... ok [INFO] [stdout] test faidx::tests::faidx_open ... ok [INFO] [stdout] test bcf::tests::test_write ... ok [INFO] [stdout] test bcf::tests::test_reader_set_threads ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_between ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_end ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_iterator_api ... ok [INFO] [stdout] test faidx::tests::faidx_position_too_large ... ok [INFO] [stdout] test faidx::tests::faidx_read_twice_bytes ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_first_base ... ok [INFO] [stdout] test bgzf::tests::test_set_threadpool ... ok [INFO] [stdout] test faidx::tests::faidx_read_twice_string ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_read_api ... ok [INFO] [stdout] test tbx::tests::bed_basic ... ok [INFO] [stdout] test bcf::tests::test_writer_set_threads ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup_to_high - should panic ... ok [INFO] [stdout] test bam::index::tests::test_index_build ... FAILED [INFO] [stdout] test faidx::tests::faidx_read_chr_start ... ok [INFO] [stdout] test tbx::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bam::tests::test_sam_writer_example ... FAILED [INFO] [stdout] test tbx::tests::test_text_header_positions ... ok [INFO] [stdout] test tbx::tests::test_text_header_regions ... ok [INFO] [stderr] [E::idx_find_and_load] Could not retrieve index file for 'test/test.bam' [INFO] [stdout] test tbx::tests::test_fails_on_bam ... ok [INFO] [stderr] [E::idx_find_and_load] Could not retrieve index file for 'test/test_left.vcf' [INFO] [stdout] test tbx::tests::test_fails_on_vcf ... ok [INFO] [stderr] [E::hts_idx_load3] Could not load local index file 'test/tabix_reader/bad_header.txt.gz.tbi' [INFO] [stdout] test tbx::tests::test_text_bad_header ... ok [INFO] [stdout] test bgzf::tests::test_open_plain ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs_full ... ok [INFO] [stdout] test bam::tests::test_write_threaded ... ok [INFO] [stdout] test bam::tests::test_write_shared_tpool ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- bam::index::tests::test_index_build stdout ---- [INFO] [stdout] thread 'bam::index::tests::test_index_build' panicked at 'called `Result::unwrap()` on an `Err` value: BamWriteIndex', src/bam/index.rs:72:51 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5631e3601870 - std::backtrace_rs::backtrace::libunwind::trace::h99dbb39dca18857d [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x5631e3601870 - std::backtrace_rs::backtrace::trace_unsynchronized::h832861927e9cfedf [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5631e3601870 - std::sys_common::backtrace::_print_fmt::h3d18154c77dcf310 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x5631e3601870 - ::fmt::he312f4ad5b9bb346 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x5631e3625b5c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/fmt/mod.rs:1115:17 [INFO] [stdout] 5: 0x5631e35fe0e5 - std::io::Write::write_fmt::h65d36b96410d80d7 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/io/mod.rs:1665:15 [INFO] [stdout] 6: 0x5631e3603e7b - std::sys_common::backtrace::_print::h65d996766de40da4 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x5631e3603e7b - std::sys_common::backtrace::print::h40df9727e635f303 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x5631e3603e7b - std::panicking::default_hook::{{closure}}::hd2da4327dea91a51 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x5631e360398c - std::panicking::default_hook::h3d55120ad6ada158 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x5631e3604544 - std::panicking::rust_panic_with_hook::hf85dd0bb545e3b55 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x5631e3604027 - std::panicking::begin_panic_handler::{{closure}}::h736ae969434da9fa [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x5631e3601d4c - std::sys_common::backtrace::__rust_end_short_backtrace::h6133bb80b1d6c3e0 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x5631e3603f89 - rust_begin_unwind [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x5631e2f12851 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x5631e2f12943 - core::result::unwrap_failed::he898b02f57993c42 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/result.rs:1599:5 [INFO] [stdout] 16: 0x5631e30c9763 - core::result::Result::unwrap::hefa0b8a15c456715 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/result.rs:1281:23 [INFO] [stdout] 17: 0x5631e30ec694 - rust_htslib::bam::index::tests::test_index_build::h497ca9f4d1441162 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/index.rs:72:9 [INFO] [stdout] 18: 0x5631e30ec5ca - rust_htslib::bam::index::tests::test_index_build::{{closure}}::h9c5c63368bdab3ee [INFO] [stdout] at /opt/rustwide/workdir/src/bam/index.rs:67:5 [INFO] [stdout] 19: 0x5631e301f08e - core::ops::function::FnOnce::call_once::hb8c64b3c0cb5b9a0 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 20: 0x5631e311fb93 - core::ops::function::FnOnce::call_once::h227fa683a5745bd3 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x5631e311fb93 - test::__rust_begin_short_backtrace::h3a193bd570ada00a [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/test/src/lib.rs:578:5 [INFO] [stdout] 22: 0x5631e311e608 - as core::ops::function::FnOnce>::call_once::h262d2f411717179a [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 23: 0x5631e311e608 - as core::ops::function::FnOnce<()>>::call_once::hfec00caec3e52a7b [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panic.rs:347:9 [INFO] [stdout] 24: 0x5631e311e608 - std::panicking::try::do_call::ha5f42e76ffda569d [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:401:40 [INFO] [stdout] 25: 0x5631e311e608 - std::panicking::try::h53f36df0935b9500 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:365:19 [INFO] [stdout] 26: 0x5631e311e608 - std::panic::catch_unwind::h5a497f74b0ce006f [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panic.rs:434:14 [INFO] [stdout] 27: 0x5631e311e608 - test::run_test_in_process::hab0aead337f48a88 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/test/src/lib.rs:601:18 [INFO] [stdout] 28: 0x5631e311e608 - test::run_test::run_test_inner::{{closure}}::h632c383164d4cba2 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/test/src/lib.rs:493:39 [INFO] [stdout] 29: 0x5631e30ecd8d - test::run_test::run_test_inner::{{closure}}::h7c4b3612891a4b58 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/test/src/lib.rs:520:37 [INFO] [stdout] 30: 0x5631e30ecd8d - std::sys_common::backtrace::__rust_begin_short_backtrace::habf7d8a08419d00e [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 31: 0x5631e30f14b8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h3acba502e2068204 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/thread/mod.rs:476:17 [INFO] [stdout] 32: 0x5631e30f14b8 - as core::ops::function::FnOnce<()>>::call_once::h526ef819c1964a35 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panic.rs:347:9 [INFO] [stdout] 33: 0x5631e30f14b8 - std::panicking::try::do_call::hc0b5663d6373cec8 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:401:40 [INFO] [stdout] 34: 0x5631e30f14b8 - std::panicking::try::ha9007ede9d35dcd6 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:365:19 [INFO] [stdout] 35: 0x5631e30f14b8 - std::panic::catch_unwind::hf60d56329ebbb81c [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panic.rs:434:14 [INFO] [stdout] 36: 0x5631e30f14b8 - std::thread::Builder::spawn_unchecked::{{closure}}::hb1722d498f4ce777 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/thread/mod.rs:475:30 [INFO] [stdout] 37: 0x5631e30f14b8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h15eb01325730c962 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 38: 0x5631e3609c47 - as core::ops::function::FnOnce>::call_once::h09f167e08fc945ff [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 39: 0x5631e3609c47 - as core::ops::function::FnOnce>::call_once::hf814fe85eeb118e0 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 40: 0x5631e3609c47 - std::sys::unix::thread::Thread::new::thread_start::hb71b17934c5f5e68 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys/unix/thread.rs:91:17 [INFO] [stdout] 41: 0x7fe2ba20b609 - start_thread [INFO] [stdout] 42: 0x7fe2b9fdb293 - clone [INFO] [stdout] 43: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- bam::tests::test_sam_writer_example stdout ---- [INFO] [stdout] thread 'bam::tests::test_sam_writer_example' panicked at 'called `Result::unwrap()` on an `Err` value: BamOpen { target: "./test/bam2sam_out.sam" }', src/bam/mod.rs:2272:83 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5631e3601870 - std::backtrace_rs::backtrace::libunwind::trace::h99dbb39dca18857d [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x5631e3601870 - std::backtrace_rs::backtrace::trace_unsynchronized::h832861927e9cfedf [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5631e3601870 - std::sys_common::backtrace::_print_fmt::h3d18154c77dcf310 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x5631e3601870 - ::fmt::he312f4ad5b9bb346 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x5631e3625b5c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/fmt/mod.rs:1115:17 [INFO] [stdout] 5: 0x5631e35fe0e5 - std::io::Write::write_fmt::h65d36b96410d80d7 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/io/mod.rs:1665:15 [INFO] [stdout] 6: 0x5631e3603e7b - std::sys_common::backtrace::_print::h65d996766de40da4 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x5631e3603e7b - std::sys_common::backtrace::print::h40df9727e635f303 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x5631e3603e7b - std::panicking::default_hook::{{closure}}::hd2da4327dea91a51 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x5631e360398c - std::panicking::default_hook::h3d55120ad6ada158 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x5631e3604544 - std::panicking::rust_panic_with_hook::hf85dd0bb545e3b55 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x5631e3604027 - std::panicking::begin_panic_handler::{{closure}}::h736ae969434da9fa [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x5631e3601d4c - std::sys_common::backtrace::__rust_end_short_backtrace::h6133bb80b1d6c3e0 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x5631e3603f89 - rust_begin_unwind [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x5631e2f12851 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x5631e2f12943 - core::result::unwrap_failed::he898b02f57993c42 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/result.rs:1599:5 [INFO] [stdout] 16: 0x5631e30c7c5f - core::result::Result::unwrap::h08b5331d4a0b2dbb [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/result.rs:1281:23 [INFO] [stdout] 17: 0x5631e3073ff7 - rust_htslib::bam::tests::test_sam_writer_example::from_bam_with_filter::h360eea23302b3015 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2272:34 [INFO] [stdout] 18: 0x5631e3073a65 - rust_htslib::bam::tests::test_sam_writer_example::hfb2d6394669d706d [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2295:22 [INFO] [stdout] 19: 0x5631e30739da - rust_htslib::bam::tests::test_sam_writer_example::{{closure}}::he151e0d48b647ddf [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2265:5 [INFO] [stdout] 20: 0x5631e301e5ce - core::ops::function::FnOnce::call_once::h6d381ccd39ce0bee [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x5631e311fb93 - core::ops::function::FnOnce::call_once::h227fa683a5745bd3 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x5631e311fb93 - test::__rust_begin_short_backtrace::h3a193bd570ada00a [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/test/src/lib.rs:578:5 [INFO] [stdout] 23: 0x5631e311e608 - as core::ops::function::FnOnce>::call_once::h262d2f411717179a [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 24: 0x5631e311e608 - as core::ops::function::FnOnce<()>>::call_once::hfec00caec3e52a7b [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panic.rs:347:9 [INFO] [stdout] 25: 0x5631e311e608 - std::panicking::try::do_call::ha5f42e76ffda569d [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:401:40 [INFO] [stdout] 26: 0x5631e311e608 - std::panicking::try::h53f36df0935b9500 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:365:19 [INFO] [stdout] 27: 0x5631e311e608 - std::panic::catch_unwind::h5a497f74b0ce006f [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panic.rs:434:14 [INFO] [stdout] 28: 0x5631e311e608 - test::run_test_in_process::hab0aead337f48a88 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/test/src/lib.rs:601:18 [INFO] [stdout] 29: 0x5631e311e608 - test::run_test::run_test_inner::{{closure}}::h632c383164d4cba2 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/test/src/lib.rs:493:39 [INFO] [stdout] 30: 0x5631e30ecd8d - test::run_test::run_test_inner::{{closure}}::h7c4b3612891a4b58 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/test/src/lib.rs:520:37 [INFO] [stdout] 31: 0x5631e30ecd8d - std::sys_common::backtrace::__rust_begin_short_backtrace::habf7d8a08419d00e [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x5631e30f14b8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h3acba502e2068204 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/thread/mod.rs:476:17 [INFO] [stdout] 33: 0x5631e30f14b8 - as core::ops::function::FnOnce<()>>::call_once::h526ef819c1964a35 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panic.rs:347:9 [INFO] [stdout] 34: 0x5631e30f14b8 - std::panicking::try::do_call::hc0b5663d6373cec8 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:401:40 [INFO] [stdout] 35: 0x5631e30f14b8 - std::panicking::try::ha9007ede9d35dcd6 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panicking.rs:365:19 [INFO] [stdout] 36: 0x5631e30f14b8 - std::panic::catch_unwind::hf60d56329ebbb81c [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/panic.rs:434:14 [INFO] [stdout] 37: 0x5631e30f14b8 - std::thread::Builder::spawn_unchecked::{{closure}}::hb1722d498f4ce777 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/thread/mod.rs:475:30 [INFO] [stdout] 38: 0x5631e30f14b8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h15eb01325730c962 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x5631e3609c47 - as core::ops::function::FnOnce>::call_once::h09f167e08fc945ff [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 40: 0x5631e3609c47 - as core::ops::function::FnOnce>::call_once::hf814fe85eeb118e0 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 41: 0x5631e3609c47 - std::sys::unix::thread::Thread::new::thread_start::hb71b17934c5f5e68 [INFO] [stdout] at /rustc/b70888601af92f6cdc0364abab3446e418b91d36/library/std/src/sys/unix/thread.rs:91:17 [INFO] [stdout] 42: 0x7fe2ba20b609 - start_thread [INFO] [stdout] 43: 0x7fe2b9fdb293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] bam::index::tests::test_index_build [INFO] [stdout] bam::tests::test_sam_writer_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 116 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.36s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "eed084c9d5579af7cce022b899691824cd2c5bc196bcedb7991c83362605aee0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eed084c9d5579af7cce022b899691824cd2c5bc196bcedb7991c83362605aee0", kill_on_drop: false }` [INFO] [stdout] eed084c9d5579af7cce022b899691824cd2c5bc196bcedb7991c83362605aee0