[INFO] fetching crate noodles-bcf 0.2.0... [INFO] testing noodles-bcf-0.2.0 against master#b70888601af92f6cdc0364abab3446e418b91d36 for pr-86479 [INFO] extracting crate noodles-bcf 0.2.0 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate noodles-bcf 0.2.0 on toolchain b70888601af92f6cdc0364abab3446e418b91d36 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate noodles-bcf 0.2.0 [INFO] finished tweaking crates.io crate noodles-bcf 0.2.0 [INFO] tweaked toml for crates.io crate noodles-bcf 0.2.0 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate crates.io crate noodles-bcf 0.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f1e0c9681cc8d84df5584af1cc33725ce733a17e5a08796eb3239d34fe74b660 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f1e0c9681cc8d84df5584af1cc33725ce733a17e5a08796eb3239d34fe74b660", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f1e0c9681cc8d84df5584af1cc33725ce733a17e5a08796eb3239d34fe74b660", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f1e0c9681cc8d84df5584af1cc33725ce733a17e5a08796eb3239d34fe74b660", kill_on_drop: false }` [INFO] [stdout] f1e0c9681cc8d84df5584af1cc33725ce733a17e5a08796eb3239d34fe74b660 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7eb30aed3d1be6fdf3677197cb57fdaf45caa4957248db74e13d3325ba099295 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7eb30aed3d1be6fdf3677197cb57fdaf45caa4957248db74e13d3325ba099295", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling tap v1.0.1 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling nom v6.2.1 [INFO] [stderr] Compiling bitvec v0.19.5 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling lexical-core v0.7.6 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling noodles-bgzf v0.2.0 [INFO] [stderr] Compiling noodles-sam v0.1.1 [INFO] [stderr] Compiling noodles-csi v0.2.0 [INFO] [stderr] Compiling noodles-tabix v0.2.0 [INFO] [stderr] Compiling noodles-core v0.1.1 [INFO] [stderr] Compiling noodles-vcf v0.1.1 [INFO] [stderr] Compiling noodles-bcf v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 22.49s [INFO] running `Command { std: "docker" "inspect" "7eb30aed3d1be6fdf3677197cb57fdaf45caa4957248db74e13d3325ba099295", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7eb30aed3d1be6fdf3677197cb57fdaf45caa4957248db74e13d3325ba099295", kill_on_drop: false }` [INFO] [stdout] 7eb30aed3d1be6fdf3677197cb57fdaf45caa4957248db74e13d3325ba099295 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d38a5ddea34b62f44e61b1cdebc8054ba620b02e8dfc471cee4cff3939ef0afe [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d38a5ddea34b62f44e61b1cdebc8054ba620b02e8dfc471cee4cff3939ef0afe", kill_on_drop: false }` [INFO] [stderr] Compiling noodles-bcf v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 7.91s [INFO] running `Command { std: "docker" "inspect" "d38a5ddea34b62f44e61b1cdebc8054ba620b02e8dfc471cee4cff3939ef0afe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d38a5ddea34b62f44e61b1cdebc8054ba620b02e8dfc471cee4cff3939ef0afe", kill_on_drop: false }` [INFO] [stdout] d38a5ddea34b62f44e61b1cdebc8054ba620b02e8dfc471cee4cff3939ef0afe [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 97505bc429f59021aa82663bb0e758632206f098909aa2b52021fce3bcf31003 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "97505bc429f59021aa82663bb0e758632206f098909aa2b52021fce3bcf31003", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_bcf-d299a52258a7df30) [INFO] [stdout] running 59 tests [INFO] [stdout] test header::string_map::tests::test_default ... ok [INFO] [stdout] test header::string_map::tests::test_from_str ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_read_genotype_field_values_with_float_values ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_read_genotype_field_values_with_int8_array_values ... ok [INFO] [stdout] test reader::record::site::info::tests::test_read_info_field_value_with_flag_value ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_read_genotype_field_values_with_float_array_values ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_read_genotype_field_values_with_int16_values ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_read_genotype_field_values_with_string_values ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_parse_genotype_genotype_field_values ... ok [INFO] [stdout] test reader::record::site::info::tests::test_read_info_field_value_with_character_value ... ok [INFO] [stdout] test reader::record::site::info::tests::test_read_info_field_value_with_character_array_value ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_read_genotype_field_values_with_int32_array_values ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_read_genotype_field_values_with_int16_array_values ... ok [INFO] [stdout] test reader::record::site::info::tests::test_read_info_field_value_with_float_value ... ok [INFO] [stdout] test reader::record::site::info::tests::test_read_info_field_value_with_float_array_value ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_read_genotype_field_values_with_int32_values ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_read_genotype_field_values_with_int8_values ... ok [INFO] [stdout] test reader::record::site::info::tests::test_read_info_field_value_with_integer_array_value ... ok [INFO] [stdout] test reader::record::site::info::tests::test_read_info_field_value_with_integer_value ... ok [INFO] [stdout] test reader::record::site::info::tests::test_read_info_field_value_with_string_value ... ok [INFO] [stdout] test reader::tests::test_read_file_format ... ok [INFO] [stdout] test reader::record::tests::test_read_record ... ok [INFO] [stdout] test record::value::int32::tests::test_from_int32_for_i32 ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotype_field_values_with_character_values ... ok [INFO] [stdout] test reader::value::ty::tests::test_read_type_with_gt_14_values ... ok [INFO] [stdout] test reader::string_map::tests::test_read_string_map_index ... ok [INFO] [stdout] test reader::value::tests::test_read_value ... ok [INFO] [stdout] test record::value::float::tests::test_from_f32_for_float ... ok [INFO] [stdout] test record::value::float::tests::test_from_float_for_f32 ... ok [INFO] [stdout] test reader::value::ty::tests::test_read_type ... ok [INFO] [stdout] test reader::tests::test_read_file_format_with_an_invalid_magic_number ... ok [INFO] [stdout] test record::value::int16::tests::test_from_i16_for_int16 ... ok [INFO] [stdout] test record::value::int16::tests::test_from_int16_for_i16 ... ok [INFO] [stdout] test record::value::int32::tests::test_from_i32_for_int32 ... ok [INFO] [stdout] test writer::record::site::info::test::test_write_info_field_value_with_character_value ... ok [INFO] [stdout] test record::value::int8::tests::test_from_i8_for_int8 ... ok [INFO] [stdout] test reader::string_map::tests::test_read_string_map_indices ... ok [INFO] [stdout] test writer::record::site::info::test::test_write_info_field_value_with_integer_array_value ... ok [INFO] [stdout] test writer::record::site::info::test::test_write_info_field_value_with_flag_value ... ok [INFO] [stdout] test writer::record::site::info::test::test_write_info_field_value_with_integer_value ... ok [INFO] [stdout] test writer::string_map::tests::test_write_string_map_index ... ok [INFO] [stdout] test writer::tests::test_write_file_format ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotype_field_values_with_string_array_values ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotype_field_values_with_integer_array_values ... ok [INFO] [stdout] test record::value::int8::tests::test_from_int8_for_i8 ... ok [INFO] [stdout] test writer::record::site::info::test::test_write_info_field_value_with_float_value ... ok [INFO] [stdout] test writer::record::site::info::test::test_write_info_field_value_with_float_array_value ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotype_field_values_with_float_array_values ... ok [INFO] [stdout] test writer::record::site::info::test::test_write_info_field_value_with_string_array_value ... ok [INFO] [stdout] test writer::record::site::info::test::test_write_info_field_value_with_string_value ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotype_field_values_with_string_values ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotype_field_values_with_float_values ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotype_field_values_with_integer_values ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotype_field_values_with_character_array_values ... ok [INFO] [stdout] test writer::record::site::info::test::test_write_info_field_value_with_character_array_value ... ok [INFO] [stdout] test writer::tests::test_write_header ... ok [INFO] [stderr] Doc-tests noodles-bcf [INFO] [stdout] test writer::value::tests::test_write_value ... ok [INFO] [stdout] test writer::value::ty::tests::test_write_type_with_gt_14_values ... ok [INFO] [stdout] test writer::value::ty::tests::test_write_type ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 59 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test src/reader.rs - reader::Reader::records (line 167) - compile ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_file_format (line 60) - compile ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::query (line 235) - compile ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::new (line 38) - compile ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::seek (line 216) - compile ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_header (line 96) - compile ... ok [INFO] [stdout] test src/record.rs - record::Record::chromosome_id (line 33) ... ok [INFO] [stdout] test src/record.rs - record::Record::position (line 61) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::new (line 38) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::get_ref (line 52) ... ok [INFO] [stdout] test src/record.rs - record::Record::end (line 107) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::virtual_position (line 189) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_file_format (line 83) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_header (line 101) ... ok [INFO] [stdout] test src/record/convert.rs - record::convert::Record::try_into_vcf_record (line 15) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::try_finish (line 68) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_vcf_record (line 131) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 3.02s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "97505bc429f59021aa82663bb0e758632206f098909aa2b52021fce3bcf31003", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "97505bc429f59021aa82663bb0e758632206f098909aa2b52021fce3bcf31003", kill_on_drop: false }` [INFO] [stdout] 97505bc429f59021aa82663bb0e758632206f098909aa2b52021fce3bcf31003