[INFO] fetching crate gchemol 0.0.41...
[INFO] testing gchemol-0.0.41 against master#b70888601af92f6cdc0364abab3446e418b91d36 for pr-86479
[INFO] extracting crate gchemol 0.0.41 into /workspace/builds/worker-1/source
[INFO] validating manifest of crates.io crate gchemol 0.0.41 on toolchain b70888601af92f6cdc0364abab3446e418b91d36
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.0.41
[INFO] finished tweaking crates.io crate gchemol 0.0.41
[INFO] tweaked toml for crates.io crate gchemol 0.0.41 written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 1783ab1782036864cdc1e4931996fbad9b410ceb2386a868d003f331d8f3f7ff
[INFO] running `Command { std: "docker" "start" "-a" "1783ab1782036864cdc1e4931996fbad9b410ceb2386a868d003f331d8f3f7ff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1783ab1782036864cdc1e4931996fbad9b410ceb2386a868d003f331d8f3f7ff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1783ab1782036864cdc1e4931996fbad9b410ceb2386a868d003f331d8f3f7ff", kill_on_drop: false }`
[INFO] [stdout] 1783ab1782036864cdc1e4931996fbad9b410ceb2386a868d003f331d8f3f7ff
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c420955b8dc255f2764bf8f450368f8d3a1084a83442dd71077301684252e5d7
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c420955b8dc255f2764bf8f450368f8d3a1084a83442dd71077301684252e5d7", kill_on_drop: false }`
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling nalgebra v0.20.0
[INFO] [stderr]    Compiling vecfx v0.1.2
[INFO] [stderr]    Compiling gchemol-lattice v0.1.0
[INFO] [stderr]    Compiling octree v0.1.0
[INFO] [stderr]    Compiling gchemol-geometry v0.0.39
[INFO] [stderr]    Compiling gchemol-neighbors v0.1.0
[INFO] [stderr]    Compiling gchemol-core v0.0.42
[INFO] [stderr]    Compiling gchemol-readwrite v0.0.41
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 31.20s
[INFO] running `Command { std: "docker" "inspect" "c420955b8dc255f2764bf8f450368f8d3a1084a83442dd71077301684252e5d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c420955b8dc255f2764bf8f450368f8d3a1084a83442dd71077301684252e5d7", kill_on_drop: false }`
[INFO] [stdout] c420955b8dc255f2764bf8f450368f8d3a1084a83442dd71077301684252e5d7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] a96a43f63038799f01d29f213a5125ffecf4fd030f79b4fd995cbea28b1fd772
[INFO] running `Command { std: "docker" "start" "-a" "a96a43f63038799f01d29f213a5125ffecf4fd030f79b4fd995cbea28b1fd772", kill_on_drop: false }`
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]  --> tests/molecule.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `mol`
[INFO] [stdout]   --> tests/io.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 8.76s
[INFO] running `Command { std: "docker" "inspect" "a96a43f63038799f01d29f213a5125ffecf4fd030f79b4fd995cbea28b1fd772", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a96a43f63038799f01d29f213a5125ffecf4fd030f79b4fd995cbea28b1fd772", kill_on_drop: false }`
[INFO] [stdout] a96a43f63038799f01d29f213a5125ffecf4fd030f79b4fd995cbea28b1fd772
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 315c6b8a28a21d7557efe02c17371deddae27224d4e7fb21bcc2710c8480bd17
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "315c6b8a28a21d7557efe02c17371deddae27224d4e7fb21bcc2710c8480bd17", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `gchemol::prelude::*`
[INFO] [stderr]  --> tests/molecule.rs:3:5
[INFO] [stderr]   |
[INFO] [stderr] 3 | use gchemol::prelude::*;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `mol`
[INFO] [stderr]   --> tests/io.rs:44:9
[INFO] [stderr]    |
[INFO] [stderr] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stderr]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `gchemol` (test "molecule") generated 1 warning
[INFO] [stderr] warning: `gchemol` (test "io") generated 1 warning
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.15s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/gchemol-c10d7156f918c93c)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/crystal.rs (/opt/rustwide/target/debug/deps/crystal-3eb350c742fedfd9)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test test_crystal ... ok
[INFO] [stdout] test test_supercell ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/io.rs (/opt/rustwide/target/debug/deps/io-30caf5c5e5481780)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test io_from_file_to_file ... ok
[INFO] [stderr]      Running tests/molecule.rs (/opt/rustwide/target/debug/deps/molecule-dcaf7346b5c4b664)
[INFO] [stdout] test read_write_molecules ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test test_new_atom ... ok
[INFO] [stderr]    Doc-tests gchemol
[INFO] [stdout] test test_molecule_properties ... ok
[INFO] [stdout] test test_new_molecule ... ok
[INFO] [stdout] test test_atom_data ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "315c6b8a28a21d7557efe02c17371deddae27224d4e7fb21bcc2710c8480bd17", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "315c6b8a28a21d7557efe02c17371deddae27224d4e7fb21bcc2710c8480bd17", kill_on_drop: false }`
[INFO] [stdout] 315c6b8a28a21d7557efe02c17371deddae27224d4e7fb21bcc2710c8480bd17