[INFO] cloning repository https://github.com/chanzuckerberg/idseq-dedup [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chanzuckerberg/idseq-dedup" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a2720d7b3d46f6529b632bd823c802d19e7ef3dc [INFO] testing chanzuckerberg/idseq-dedup against master#b70888601af92f6cdc0364abab3446e418b91d36 for pr-86479 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/chanzuckerberg/idseq-dedup on toolchain b70888601af92f6cdc0364abab3446e418b91d36 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/chanzuckerberg/idseq-dedup [INFO] finished tweaking git repo https://github.com/chanzuckerberg/idseq-dedup [INFO] tweaked toml for git repo https://github.com/chanzuckerberg/idseq-dedup written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/chanzuckerberg/idseq-dedup already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c277cf70232d0a8ec689961531b13c3ac6b540fda0dd9364540f93147cdf37c6 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c277cf70232d0a8ec689961531b13c3ac6b540fda0dd9364540f93147cdf37c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c277cf70232d0a8ec689961531b13c3ac6b540fda0dd9364540f93147cdf37c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c277cf70232d0a8ec689961531b13c3ac6b540fda0dd9364540f93147cdf37c6", kill_on_drop: false }` [INFO] [stdout] c277cf70232d0a8ec689961531b13c3ac6b540fda0dd9364540f93147cdf37c6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0b55a03dfa8300940d40daac3a95e5e5e0b29925d7bff0a520de779296df9ac0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0b55a03dfa8300940d40daac3a95e5e5e0b29925d7bff0a520de779296df9ac0", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.42 [INFO] [stderr] Compiling libc v0.2.78 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling simple-error v0.2.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling matrixmultiply v0.2.3 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.1.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling snafu-derive v0.6.9 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling enum-map-derive v0.4.3 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling enum-map v0.6.3 [INFO] [stderr] Compiling snafu v0.6.9 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling multimap v0.8.2 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling idseq-dedup v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 08s [INFO] running `Command { std: "docker" "inspect" "0b55a03dfa8300940d40daac3a95e5e5e0b29925d7bff0a520de779296df9ac0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0b55a03dfa8300940d40daac3a95e5e5e0b29925d7bff0a520de779296df9ac0", kill_on_drop: false }` [INFO] [stdout] 0b55a03dfa8300940d40daac3a95e5e5e0b29925d7bff0a520de779296df9ac0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2112afdbc995ea674dfa1e7daacc15b9ce166df7b50a0ed42dd0427fec3c4c5f [INFO] running `Command { std: "docker" "start" "-a" "2112afdbc995ea674dfa1e7daacc15b9ce166df7b50a0ed42dd0427fec3c4c5f", kill_on_drop: false }` [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling idseq-dedup v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 6.33s [INFO] running `Command { std: "docker" "inspect" "2112afdbc995ea674dfa1e7daacc15b9ce166df7b50a0ed42dd0427fec3c4c5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2112afdbc995ea674dfa1e7daacc15b9ce166df7b50a0ed42dd0427fec3c4c5f", kill_on_drop: false }` [INFO] [stdout] 2112afdbc995ea674dfa1e7daacc15b9ce166df7b50a0ed42dd0427fec3c4c5f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] d62dfb91f5b37e9335d17695424f8f03d125a62f759bd651bd8592dc836a4b11 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d62dfb91f5b37e9335d17695424f8f03d125a62f759bd651bd8592dc836a4b11", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/idseq_dedup-588784fe4eb96e17) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test paired::test::test_r2_error ... ok [INFO] [stdout] test paired::test::test_r2_longer ... ok [INFO] [stdout] test clusters::test::test_insert_single ... ok [INFO] [stdout] test clusters::test::test_write_cluster_sizes ... ok [INFO] [stdout] test clusters::test::test_insert_pair ... ok [INFO] [stdout] test paired::test::test_different_ids ... ok [INFO] [stdout] test test::test_run_dedup_paired_mismatched_files ... ok [INFO] [stdout] test paired::test::test_r1_error ... ok [INFO] [stdout] test test::test_run_dedup_single ... ok [INFO] [stdout] test test::test_run_dedup_paired ... ok [INFO] [stdout] test paired::test::test_r1_longer ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "d62dfb91f5b37e9335d17695424f8f03d125a62f759bd651bd8592dc836a4b11", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d62dfb91f5b37e9335d17695424f8f03d125a62f759bd651bd8592dc836a4b11", kill_on_drop: false }` [INFO] [stdout] d62dfb91f5b37e9335d17695424f8f03d125a62f759bd651bd8592dc836a4b11