[INFO] fetching crate flann-sys 0.1.0... [INFO] checking flann-sys-0.1.0 against try#8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346 for pr-86194 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a5db3ad2ed4285ea527511c39c93fe449ceed62efbf7532da66deccda9f2d5ce [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a5db3ad2ed4285ea527511c39c93fe449ceed62efbf7532da66deccda9f2d5ce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a5db3ad2ed4285ea527511c39c93fe449ceed62efbf7532da66deccda9f2d5ce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a5db3ad2ed4285ea527511c39c93fe449ceed62efbf7532da66deccda9f2d5ce", kill_on_drop: false }` [INFO] [stdout] a5db3ad2ed4285ea527511c39c93fe449ceed62efbf7532da66deccda9f2d5ce [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6da6fbcf5802d5d0fa56b581cd7a997c19ca1f6ab8e5f8352bb08fd26fa5f34c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6da6fbcf5802d5d0fa56b581cd7a997c19ca1f6ab8e5f8352bb08fd26fa5f34c", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.97 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-4f4c807a22953699/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-a1077ef0e203292f/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-a1077ef0e203292f/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-a1077ef0e203292f/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5601891f0ec0 - std::backtrace_rs::backtrace::libunwind::trace::hfa838fc631229987 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5601891f0ec0 - std::backtrace_rs::backtrace::trace_unsynchronized::h93a23e36ec026219 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5601891f0ec0 - std::sys_common::backtrace::_print_fmt::hba56c7f796a4152f [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5601891f0ec0 - ::fmt::h214637f1e26310e1 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x560189216bcc - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x5601891ed8f5 - std::io::Write::write_fmt::heb07fc0616bbd06d [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/io/mod.rs:1588:15 [INFO] [stderr] 6: 0x5601891f362b - std::sys_common::backtrace::_print::h2c2441c37e894fb5 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5601891f362b - std::sys_common::backtrace::print::h4fb679ac439362ea [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5601891f362b - std::panicking::default_hook::{{closure}}::h56bbadec2356e5d2 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5601891f3101 - std::panicking::default_hook::hb25822b45f6fdc4e [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5601891f3cf4 - std::panicking::rust_panic_with_hook::h4da5578e7277d2d4 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x5601891f37d7 - std::panicking::begin_panic_handler::{{closure}}::h003783ddb3cba4e8 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x5601891f139c - std::sys_common::backtrace::__rust_end_short_backtrace::hd138d2032731ed21 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5601891f3739 - rust_begin_unwind [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x560188d05beb - std::panicking::begin_panic_fmt::h2db7e4060dc9c373 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/panicking.rs:457:5 [INFO] [stderr] 15: 0x560188d11683 - cmake::fail::h416193225edb6eae [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] 16: 0x560188d11091 - cmake::run::hacdebf8231baf9fe [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9 [INFO] [stderr] 17: 0x560188d0da15 - cmake::Config::build::hb13cd86f39d47578 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:707:13 [INFO] [stderr] 18: 0x560188d089d5 - build_script_build::main::hccabd63ed02f3fe0 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30:19 [INFO] [stderr] 19: 0x560188d0771b - core::ops::function::FnOnce::call_once::h3ef499db2d8ebd8a [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x560188d07f2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h8255747af257fff1 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 21: 0x560188d07c61 - std::rt::lang_start::{{closure}}::h84a308cdbe623514 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/rt.rs:49:18 [INFO] [stderr] 22: 0x5601891f41f9 - core::ops::function::impls:: for &F>::call_once::hd933294140eb11aa [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x5601891f41f9 - std::panicking::try::do_call::h8342fe3d9218b807 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/panicking.rs:401:40 [INFO] [stderr] 24: 0x5601891f41f9 - std::panicking::try::hcbd73d6d0d58a8f0 [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/panicking.rs:365:19 [INFO] [stderr] 25: 0x5601891f41f9 - std::panic::catch_unwind::hde9cf73f810acfcc [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/panic.rs:434:14 [INFO] [stderr] 26: 0x5601891f41f9 - std::rt::lang_start_internal::heb39e7ea6e5d6f6f [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/rt.rs:34:21 [INFO] [stderr] 27: 0x560188d07c40 - std::rt::lang_start::hb3bbf110eff6272a [INFO] [stderr] at /rustc/8552849d5ae3b6c66b89a0ac2e9c1e3ef5cde346/library/std/src/rt.rs:48:5 [INFO] [stderr] 28: 0x560188d08dec - main [INFO] [stderr] 29: 0x7ff8644310b3 - __libc_start_main [INFO] [stderr] 30: 0x560188d0706e - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "6da6fbcf5802d5d0fa56b581cd7a997c19ca1f6ab8e5f8352bb08fd26fa5f34c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6da6fbcf5802d5d0fa56b581cd7a997c19ca1f6ab8e5f8352bb08fd26fa5f34c", kill_on_drop: false }` [INFO] [stdout] 6da6fbcf5802d5d0fa56b581cd7a997c19ca1f6ab8e5f8352bb08fd26fa5f34c