[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against master#c5fbcd35a8217a17f6b63a22217ace06cf8f5f02 for pr-86194 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain c5fbcd35a8217a17f6b63a22217ace06cf8f5f02 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] eb362186e46d987419d00e1d2a5f6db6247a01311f518774fb6ed07078c3c187 [INFO] running `Command { std: "docker" "start" "-a" "eb362186e46d987419d00e1d2a5f6db6247a01311f518774fb6ed07078c3c187", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "eb362186e46d987419d00e1d2a5f6db6247a01311f518774fb6ed07078c3c187", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eb362186e46d987419d00e1d2a5f6db6247a01311f518774fb6ed07078c3c187", kill_on_drop: false }` [INFO] [stdout] eb362186e46d987419d00e1d2a5f6db6247a01311f518774fb6ed07078c3c187 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 87f37bc5bafc445bbd896ef88d65f34b0ce33599dc3d91caa42469e592275db0 [INFO] running `Command { std: "docker" "start" "-a" "87f37bc5bafc445bbd896ef88d65f34b0ce33599dc3d91caa42469e592275db0", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-154fc7c416496df4/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-cfbc92c69bc4b4b7/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-cfbc92c69bc4b4b7/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a1f0eccfd0 - std::backtrace_rs::backtrace::libunwind::trace::hfa838fc631229987 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55a1f0eccfd0 - std::backtrace_rs::backtrace::trace_unsynchronized::h93a23e36ec026219 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55a1f0eccfd0 - std::sys_common::backtrace::_print_fmt::hba56c7f796a4152f [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55a1f0eccfd0 - ::fmt::h214637f1e26310e1 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55a1f0eed08c - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x55a1f0eca055 - std::io::Write::write_fmt::heb07fc0616bbd06d [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/io/mod.rs:1588:15 [INFO] [stderr] 6: 0x55a1f0ecf65b - std::sys_common::backtrace::_print::h2c2441c37e894fb5 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55a1f0ecf65b - std::sys_common::backtrace::print::h4fb679ac439362ea [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55a1f0ecf65b - std::panicking::default_hook::{{closure}}::h56bbadec2356e5d2 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55a1f0ecf131 - std::panicking::default_hook::hb25822b45f6fdc4e [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55a1f0ecfd24 - std::panicking::rust_panic_with_hook::h4da5578e7277d2d4 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55a1f0ecf807 - std::panicking::begin_panic_handler::{{closure}}::h003783ddb3cba4e8 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x55a1f0ecd4ac - std::sys_common::backtrace::__rust_end_short_backtrace::hd138d2032731ed21 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55a1f0ecf769 - rust_begin_unwind [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x55a1f0e5cc4b - std::panicking::begin_panic_fmt::h2db7e4060dc9c373 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:457:5 [INFO] [stderr] 15: 0x55a1f0e6b91c - cmake::fail::h832376e6ec200ea9 [INFO] [stderr] 16: 0x55a1f0e6b352 - cmake::run::h0b632919927294f7 [INFO] [stderr] 17: 0x55a1f0e6768d - cmake::Config::build::h727401191da9008c [INFO] [stderr] 18: 0x55a1f0e60880 - build_script_build::main::h2e202d392af5c456 [INFO] [stderr] 19: 0x55a1f0e62653 - core::ops::function::FnOnce::call_once::hcf5915ab6f1a2662 [INFO] [stderr] 20: 0x55a1f0e62569 - std::sys_common::backtrace::__rust_begin_short_backtrace::h61b680b0a337c4d9 [INFO] [stderr] 21: 0x55a1f0e641a9 - std::rt::lang_start::{{closure}}::hcfff0dde03bfb955 [INFO] [stderr] 22: 0x55a1f0ed0229 - core::ops::function::impls:: for &F>::call_once::hd933294140eb11aa [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55a1f0ed0229 - std::panicking::try::do_call::h8342fe3d9218b807 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:401:40 [INFO] [stderr] 24: 0x55a1f0ed0229 - std::panicking::try::hcbd73d6d0d58a8f0 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:365:19 [INFO] [stderr] 25: 0x55a1f0ed0229 - std::panic::catch_unwind::hde9cf73f810acfcc [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panic.rs:434:14 [INFO] [stderr] 26: 0x55a1f0ed0229 - std::rt::lang_start_internal::heb39e7ea6e5d6f6f [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/rt.rs:34:21 [INFO] [stderr] 27: 0x55a1f0e64191 - std::rt::lang_start::h62778f852121a2be [INFO] [stderr] 28: 0x55a1f0e614b3 - main [INFO] [stderr] 29: 0x7f5f329010b3 - __libc_start_main [INFO] [stderr] 30: 0x55a1f0e5dace - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "87f37bc5bafc445bbd896ef88d65f34b0ce33599dc3d91caa42469e592275db0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "87f37bc5bafc445bbd896ef88d65f34b0ce33599dc3d91caa42469e592275db0", kill_on_drop: false }` [INFO] [stdout] 87f37bc5bafc445bbd896ef88d65f34b0ce33599dc3d91caa42469e592275db0