[INFO] fetching crate hdf5 0.7.1... [INFO] checking hdf5-0.7.1 against master#c5fbcd35a8217a17f6b63a22217ace06cf8f5f02 for pr-86194 [INFO] extracting crate hdf5 0.7.1 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate hdf5 0.7.1 on toolchain c5fbcd35a8217a17f6b63a22217ace06cf8f5f02 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.7.1 [INFO] finished tweaking crates.io crate hdf5 0.7.1 [INFO] tweaked toml for crates.io crate hdf5 0.7.1 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.7.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d8614cb146079620f31d2fdd33743ad1b1094e6d3acfeb91e82f14890a16f33a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d8614cb146079620f31d2fdd33743ad1b1094e6d3acfeb91e82f14890a16f33a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d8614cb146079620f31d2fdd33743ad1b1094e6d3acfeb91e82f14890a16f33a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d8614cb146079620f31d2fdd33743ad1b1094e6d3acfeb91e82f14890a16f33a", kill_on_drop: false }` [INFO] [stdout] d8614cb146079620f31d2fdd33743ad1b1094e6d3acfeb91e82f14890a16f33a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 4b0d2fa08695264f54b5bcc95876d2137598997192cfda1855c609bdc1668de3 [INFO] running `Command { std: "docker" "start" "-a" "4b0d2fa08695264f54b5bcc95876d2137598997192cfda1855c609bdc1668de3", kill_on_drop: false }` [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libloading v0.6.2 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Compiling syn v1.0.38 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling hdf5 v0.7.1 (/opt/rustwide/workdir) [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Checking hdf5-types v0.7.1 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking aho-corasick v0.7.13 [INFO] [stderr] Checking parking_lot_core v0.8.2 [INFO] [stderr] Checking lock_api v0.4.2 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking rand_core v0.6.1 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Checking ndarray v0.13.1 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-58b52e18754fd778/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55cc4b8628f0 - std::backtrace_rs::backtrace::libunwind::trace::hfa838fc631229987 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55cc4b8628f0 - std::backtrace_rs::backtrace::trace_unsynchronized::h93a23e36ec026219 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55cc4b8628f0 - std::sys_common::backtrace::_print_fmt::hba56c7f796a4152f [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55cc4b8628f0 - ::fmt::h214637f1e26310e1 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55cc4b880e6c - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x55cc4b85fe55 - std::io::Write::write_fmt::heb07fc0616bbd06d [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/io/mod.rs:1588:15 [INFO] [stderr] 6: 0x55cc4b86495b - std::sys_common::backtrace::_print::h2c2441c37e894fb5 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55cc4b86495b - std::sys_common::backtrace::print::h4fb679ac439362ea [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55cc4b86495b - std::panicking::default_hook::{{closure}}::h56bbadec2356e5d2 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55cc4b864431 - std::panicking::default_hook::hb25822b45f6fdc4e [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55cc4b865024 - std::panicking::rust_panic_with_hook::h4da5578e7277d2d4 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55cc4b7af9b3 - std::panicking::begin_panic::{{closure}}::h0836b738276b4dfe [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x55cc4b7ca219 - std::sys_common::backtrace::__rust_end_short_backtrace::h0a5c6ed30eb15c77 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55cc4b7af8e9 - std::panicking::begin_panic::hedffd52003290218 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x55cc4b65bda7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h84985e139bb49acb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55cc4b65d5db - build_script_build::main::h4ed6749551fb5b99 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55cc4b66060b - core::ops::function::FnOnce::call_once::h30ca4651015568eb [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55cc4b65fafe - std::sys_common::backtrace::__rust_begin_short_backtrace::h5146423e1226efd5 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55cc4b662891 - std::rt::lang_start::{{closure}}::h081ff1b446fb82e7 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/rt.rs:49:18 [INFO] [stderr] 19: 0x55cc4b865529 - core::ops::function::impls:: for &F>::call_once::hd933294140eb11aa [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55cc4b865529 - std::panicking::try::do_call::h8342fe3d9218b807 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x55cc4b865529 - std::panicking::try::hcbd73d6d0d58a8f0 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x55cc4b865529 - std::panic::catch_unwind::hde9cf73f810acfcc [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panic.rs:434:14 [INFO] [stderr] 23: 0x55cc4b865529 - std::rt::lang_start_internal::heb39e7ea6e5d6f6f [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/rt.rs:34:21 [INFO] [stderr] 24: 0x55cc4b662870 - std::rt::lang_start::hc27ad4a5b4be4f4c [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/rt.rs:48:5 [INFO] [stderr] 25: 0x55cc4b65eacc - main [INFO] [stderr] 26: 0x7f5fbc3aa0b3 - __libc_start_main [INFO] [stderr] 27: 0x55cc4b656f0e - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "4b0d2fa08695264f54b5bcc95876d2137598997192cfda1855c609bdc1668de3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4b0d2fa08695264f54b5bcc95876d2137598997192cfda1855c609bdc1668de3", kill_on_drop: false }` [INFO] [stdout] 4b0d2fa08695264f54b5bcc95876d2137598997192cfda1855c609bdc1668de3