[INFO] cloning repository https://github.com/rennelou/rust-fdmbpm [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/rennelou/rust-fdmbpm" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frennelou%2Frust-fdmbpm", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frennelou%2Frust-fdmbpm'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 38ee909ea3538e852793c2a6a0d4baaae177d194 [INFO] checking rennelou/rust-fdmbpm against master#c5fbcd35a8217a17f6b63a22217ace06cf8f5f02 for pr-86194 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frennelou%2Frust-fdmbpm" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/rennelou/rust-fdmbpm on toolchain c5fbcd35a8217a17f6b63a22217ace06cf8f5f02 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/rennelou/rust-fdmbpm [INFO] finished tweaking git repo https://github.com/rennelou/rust-fdmbpm [INFO] tweaked toml for git repo https://github.com/rennelou/rust-fdmbpm written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/rennelou/rust-fdmbpm already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 5303bf363e897864f17fe7b353fc3b5fb16c5dcb2b963593c82e3a073023eb51 [INFO] running `Command { std: "docker" "start" "-a" "5303bf363e897864f17fe7b353fc3b5fb16c5dcb2b963593c82e3a073023eb51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5303bf363e897864f17fe7b353fc3b5fb16c5dcb2b963593c82e3a073023eb51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5303bf363e897864f17fe7b353fc3b5fb16c5dcb2b963593c82e3a073023eb51", kill_on_drop: false }` [INFO] [stdout] 5303bf363e897864f17fe7b353fc3b5fb16c5dcb2b963593c82e3a073023eb51 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+c5fbcd35a8217a17f6b63a22217ace06cf8f5f02" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a77f112a0acccb78536dceda0ee2cfe7d76472cf4ffc7c9c2b0e19b8ee0861c1 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a77f112a0acccb78536dceda0ee2cfe7d76472cf4ffc7c9c2b0e19b8ee0861c1", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Compiling hdf5 v0.7.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-bigint v0.3.1 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking hdf5-types v0.7.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking num-complex v0.3.1 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling hdf5-derive v0.7.1 [INFO] [stderr] Checking num v0.3.1 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5d103b5c69600da3/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55c33a1ad680 - std::backtrace_rs::backtrace::libunwind::trace::hfa838fc631229987 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55c33a1ad680 - std::backtrace_rs::backtrace::trace_unsynchronized::h93a23e36ec026219 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55c33a1ad680 - std::sys_common::backtrace::_print_fmt::hba56c7f796a4152f [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55c33a1ad680 - ::fmt::h214637f1e26310e1 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55c33a1cbbfc - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x55c33a1aabe5 - std::io::Write::write_fmt::heb07fc0616bbd06d [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/io/mod.rs:1588:15 [INFO] [stderr] 6: 0x55c33a1af6eb - std::sys_common::backtrace::_print::h2c2441c37e894fb5 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55c33a1af6eb - std::sys_common::backtrace::print::h4fb679ac439362ea [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55c33a1af6eb - std::panicking::default_hook::{{closure}}::h56bbadec2356e5d2 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55c33a1af1c1 - std::panicking::default_hook::hb25822b45f6fdc4e [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55c33a1afdb4 - std::panicking::rust_panic_with_hook::h4da5578e7277d2d4 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55c33a0ea8b3 - std::panicking::begin_panic::{{closure}}::hc12b08fbf0ec957d [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x55c33a0f6079 - std::sys_common::backtrace::__rust_end_short_backtrace::h089872f4b1026d50 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55c33a0ea7e9 - std::panicking::begin_panic::hdfe4d6da21703834 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x55c339fa1ed7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::ha6297c61cb0ac90e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55c339fa370b - build_script_build::main::h5671c0726ba2da7c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55c339fa830b - core::ops::function::FnOnce::call_once::h30944329ca015676 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55c339faf9ae - std::sys_common::backtrace::__rust_begin_short_backtrace::h2fdb50192259f09b [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55c339fae011 - std::rt::lang_start::{{closure}}::h0afbfbf587aa2c74 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/rt.rs:49:18 [INFO] [stderr] 19: 0x55c33a1b02b9 - core::ops::function::impls:: for &F>::call_once::hd933294140eb11aa [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55c33a1b02b9 - std::panicking::try::do_call::h8342fe3d9218b807 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x55c33a1b02b9 - std::panicking::try::hcbd73d6d0d58a8f0 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x55c33a1b02b9 - std::panic::catch_unwind::hde9cf73f810acfcc [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/panic.rs:434:14 [INFO] [stderr] 23: 0x55c33a1b02b9 - std::rt::lang_start_internal::heb39e7ea6e5d6f6f [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/rt.rs:34:21 [INFO] [stderr] 24: 0x55c339fadff0 - std::rt::lang_start::ha0937b9dc98f7ee6 [INFO] [stderr] at /rustc/c5fbcd35a8217a17f6b63a22217ace06cf8f5f02/library/std/src/rt.rs:48:5 [INFO] [stderr] 25: 0x55c339fa4bfc - main [INFO] [stderr] 26: 0x7f3e69a980b3 - __libc_start_main [INFO] [stderr] 27: 0x55c339f9cf0e - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "a77f112a0acccb78536dceda0ee2cfe7d76472cf4ffc7c9c2b0e19b8ee0861c1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a77f112a0acccb78536dceda0ee2cfe7d76472cf4ffc7c9c2b0e19b8ee0861c1", kill_on_drop: false }` [INFO] [stdout] a77f112a0acccb78536dceda0ee2cfe7d76472cf4ffc7c9c2b0e19b8ee0861c1