[INFO] cloning repository https://github.com/luyoutao/sam_seq_compressibility [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/luyoutao/sam_seq_compressibility" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fluyoutao%2Fsam_seq_compressibility", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fluyoutao%2Fsam_seq_compressibility'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] bfeff70ff885351eb9b1f31a452d930026d38dea [INFO] testing luyoutao/sam_seq_compressibility against try#ce59db7a1b1b012fb2793c4641c1bdecad7a128b for pr-85530 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fluyoutao%2Fsam_seq_compressibility" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/luyoutao/sam_seq_compressibility on toolchain ce59db7a1b1b012fb2793c4641c1bdecad7a128b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/luyoutao/sam_seq_compressibility [INFO] finished tweaking git repo https://github.com/luyoutao/sam_seq_compressibility [INFO] tweaked toml for git repo https://github.com/luyoutao/sam_seq_compressibility written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/luyoutao/sam_seq_compressibility already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7d0e747fd1d741c367c47e4a00e229ad6a1455a364071abcfd3d67c6e70ed48b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7d0e747fd1d741c367c47e4a00e229ad6a1455a364071abcfd3d67c6e70ed48b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7d0e747fd1d741c367c47e4a00e229ad6a1455a364071abcfd3d67c6e70ed48b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7d0e747fd1d741c367c47e4a00e229ad6a1455a364071abcfd3d67c6e70ed48b", kill_on_drop: false }` [INFO] [stdout] 7d0e747fd1d741c367c47e4a00e229ad6a1455a364071abcfd3d67c6e70ed48b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] dbee64857592d8c66a9ddda0cbc5d3b8b887a1431b240f1370f8860866abd809 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "dbee64857592d8c66a9ddda0cbc5d3b8b887a1431b240f1370f8860866abd809", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling time v0.1.43 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.16 [INFO] [stderr] Compiling chrono v0.4.13 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling sam_seq_compressibility v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `debug`, `error`, `warn` [INFO] [stdout] --> src/main.rs:6:11 [INFO] [stdout] | [INFO] [stdout] 6 | use log::{debug, error, info, trace, warn, LevelFilter}; [INFO] [stdout] | ^^^^^ ^^^^^ ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:10:41 [INFO] [stdout] | [INFO] [stdout] 10 | use std::io::{self, BufRead, BufReader, BufWriter, Read, Write}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::str::from_utf8` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::str::from_utf8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `read_pair` is never read [INFO] [stdout] --> src/main.rs:365:17 [INFO] [stdout] | [INFO] [stdout] 365 | let mut read_pair: Option = None; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:361:13 [INFO] [stdout] | [INFO] [stdout] 361 | let mut infh = self.infh.as_mut().expect("Failed to access infh!"); [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:362:13 [INFO] [stdout] | [INFO] [stdout] 362 | let mut outfh = self.outfh.as_mut().expect("Failed to access outfh"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `endtype` [INFO] [stdout] --> src/main.rs:316:5 [INFO] [stdout] | [INFO] [stdout] 316 | endtype: EndType, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:366:9 [INFO] [stdout] | [INFO] [stdout] 366 | outfh.write(format!("ReadID\tSeqR1\tSeqR2\tSeqPair\tCompressibilityR1\tCompressibilityR2\tCompressibilityPair\n").as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:427:21 [INFO] [stdout] | [INFO] [stdout] 427 | outfh.write(format!("{}\t{}\t{}\t{}", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:448:21 [INFO] [stdout] | [INFO] [stdout] 448 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:490:17 [INFO] [stdout] | [INFO] [stdout] 490 | outfh.write(format!("{}\t{}\t{}\t{}\n", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:510:17 [INFO] [stdout] | [INFO] [stdout] 510 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 9.80s [INFO] running `Command { std: "docker" "inspect" "dbee64857592d8c66a9ddda0cbc5d3b8b887a1431b240f1370f8860866abd809", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dbee64857592d8c66a9ddda0cbc5d3b8b887a1431b240f1370f8860866abd809", kill_on_drop: false }` [INFO] [stdout] dbee64857592d8c66a9ddda0cbc5d3b8b887a1431b240f1370f8860866abd809 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 12931b73a7b6c4ca29d079e1415c4b0c54880c8d459f6ee4f394d3b613af72a0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "12931b73a7b6c4ca29d079e1415c4b0c54880c8d459f6ee4f394d3b613af72a0", kill_on_drop: false }` [INFO] [stderr] Compiling sam_seq_compressibility v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `debug`, `error`, `warn` [INFO] [stdout] --> src/main.rs:6:11 [INFO] [stdout] | [INFO] [stdout] 6 | use log::{debug, error, info, trace, warn, LevelFilter}; [INFO] [stdout] | ^^^^^ ^^^^^ ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:10:41 [INFO] [stdout] | [INFO] [stdout] 10 | use std::io::{self, BufRead, BufReader, BufWriter, Read, Write}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::str::from_utf8` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::str::from_utf8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `read_pair` is never read [INFO] [stdout] --> src/main.rs:365:17 [INFO] [stdout] | [INFO] [stdout] 365 | let mut read_pair: Option = None; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:361:13 [INFO] [stdout] | [INFO] [stdout] 361 | let mut infh = self.infh.as_mut().expect("Failed to access infh!"); [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:362:13 [INFO] [stdout] | [INFO] [stdout] 362 | let mut outfh = self.outfh.as_mut().expect("Failed to access outfh"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `endtype` [INFO] [stdout] --> src/main.rs:316:5 [INFO] [stdout] | [INFO] [stdout] 316 | endtype: EndType, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:366:9 [INFO] [stdout] | [INFO] [stdout] 366 | outfh.write(format!("ReadID\tSeqR1\tSeqR2\tSeqPair\tCompressibilityR1\tCompressibilityR2\tCompressibilityPair\n").as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:427:21 [INFO] [stdout] | [INFO] [stdout] 427 | outfh.write(format!("{}\t{}\t{}\t{}", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:448:21 [INFO] [stdout] | [INFO] [stdout] 448 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:490:17 [INFO] [stdout] | [INFO] [stdout] 490 | outfh.write(format!("{}\t{}\t{}\t{}\n", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:510:17 [INFO] [stdout] | [INFO] [stdout] 510 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.74s [INFO] running `Command { std: "docker" "inspect" "12931b73a7b6c4ca29d079e1415c4b0c54880c8d459f6ee4f394d3b613af72a0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "12931b73a7b6c4ca29d079e1415c4b0c54880c8d459f6ee4f394d3b613af72a0", kill_on_drop: false }` [INFO] [stdout] 12931b73a7b6c4ca29d079e1415c4b0c54880c8d459f6ee4f394d3b613af72a0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 56cb3125bc3e42aa7b1ae0c56f7409e5503091cf06084fe87af17df2cae098f2 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "56cb3125bc3e42aa7b1ae0c56f7409e5503091cf06084fe87af17df2cae098f2", kill_on_drop: false }` [INFO] [stderr] warning: unused imports: `debug`, `error`, `warn` [INFO] [stderr] --> src/main.rs:6:11 [INFO] [stderr] | [INFO] [stderr] 6 | use log::{debug, error, info, trace, warn, LevelFilter}; [INFO] [stderr] | ^^^^^ ^^^^^ ^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `BufWriter` [INFO] [stderr] --> src/main.rs:10:41 [INFO] [stderr] | [INFO] [stderr] 10 | use std::io::{self, BufRead, BufReader, BufWriter, Read, Write}; [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::str::from_utf8` [INFO] [stderr] --> src/main.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | use std::str::from_utf8; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: value assigned to `read_pair` is never read [INFO] [stderr] --> src/main.rs:365:17 [INFO] [stderr] | [INFO] [stderr] 365 | let mut read_pair: Option = None; [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_assignments)]` on by default [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:361:13 [INFO] [stderr] | [INFO] [stderr] 361 | let mut infh = self.infh.as_mut().expect("Failed to access infh!"); [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:362:13 [INFO] [stderr] | [INFO] [stderr] 362 | let mut outfh = self.outfh.as_mut().expect("Failed to access outfh"); [INFO] [stderr] | ----^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: field is never read: `endtype` [INFO] [stderr] --> src/main.rs:316:5 [INFO] [stderr] | [INFO] [stderr] 316 | endtype: EndType, [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:366:9 [INFO] [stderr] | [INFO] [stderr] 366 | outfh.write(format!("ReadID\tSeqR1\tSeqR2\tSeqPair\tCompressibilityR1\tCompressibilityR2\tCompressibilityPair\n").as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:427:21 [INFO] [stderr] | [INFO] [stderr] 427 | outfh.write(format!("{}\t{}\t{}\t{}", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:448:21 [INFO] [stderr] | [INFO] [stderr] 448 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:490:17 [INFO] [stderr] | [INFO] [stderr] 490 | outfh.write(format!("{}\t{}\t{}\t{}\n", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:510:17 [INFO] [stderr] | [INFO] [stderr] 510 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: 12 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/sam_seq_compressibility-477df6a4f8612f9a) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "56cb3125bc3e42aa7b1ae0c56f7409e5503091cf06084fe87af17df2cae098f2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "56cb3125bc3e42aa7b1ae0c56f7409e5503091cf06084fe87af17df2cae098f2", kill_on_drop: false }` [INFO] [stdout] 56cb3125bc3e42aa7b1ae0c56f7409e5503091cf06084fe87af17df2cae098f2