[INFO] cloning repository https://github.com/MikkelSchubert/crispy [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MikkelSchubert/crispy" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMikkelSchubert%2Fcrispy", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMikkelSchubert%2Fcrispy'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 47062174396e44f87eb0e67a234019adba2fc584 [INFO] testing MikkelSchubert/crispy against try#ce59db7a1b1b012fb2793c4641c1bdecad7a128b for pr-85530 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMikkelSchubert%2Fcrispy" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/MikkelSchubert/crispy on toolchain ce59db7a1b1b012fb2793c4641c1bdecad7a128b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/MikkelSchubert/crispy [INFO] finished tweaking git repo https://github.com/MikkelSchubert/crispy [INFO] tweaked toml for git repo https://github.com/MikkelSchubert/crispy written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/MikkelSchubert/crispy already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bit-vec v0.5.1 [INFO] [stderr] Downloaded number_prefix v0.3.0 [INFO] [stderr] Downloaded console v0.9.0 [INFO] [stderr] Downloaded serde_derive v1.0.101 [INFO] [stderr] Downloaded bit-set v0.5.1 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded statrs v0.12.0 [INFO] [stderr] Downloaded ordermap v0.3.5 [INFO] [stderr] Downloaded bytecount v0.6.0 [INFO] [stderr] Downloaded getset v0.0.9 [INFO] [stderr] Downloaded proc-macro2 v1.0.5 [INFO] [stderr] Downloaded csv-core v0.1.6 [INFO] [stderr] Downloaded ndarray v0.13.1 [INFO] [stderr] Downloaded itertools v0.9.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded snafu-derive v0.6.8 [INFO] [stderr] Downloaded snafu v0.6.8 [INFO] [stderr] Downloaded strum v0.18.0 [INFO] [stderr] Downloaded backtrace v0.3.38 [INFO] [stderr] Downloaded strum_macros v0.18.0 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] [stderr] Downloaded serde v1.0.101 [INFO] [stderr] Downloaded cc v1.0.45 [INFO] [stderr] Downloaded indicatif v0.12.0 [INFO] [stderr] Downloaded rawpointer v0.2.1 [INFO] [stderr] Downloaded bstr v0.2.8 [INFO] [stderr] Downloaded bitflags v1.2.0 [INFO] [stderr] Downloaded csv v1.1.1 [INFO] [stderr] Downloaded regex-automata v0.1.8 [INFO] [stderr] Downloaded bio v0.31.0 [INFO] [stderr] Downloaded multimap v0.6.0 [INFO] [stderr] Downloaded unicode-width v0.1.6 [INFO] [stderr] Downloaded bv v0.11.1 [INFO] [stderr] Downloaded matrixmultiply v0.2.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] af6dde8df23b3d10b45adb9f3b51b17293df8a2eb71b593a946bd22f06c9fcd0 [INFO] running `Command { std: "docker" "start" "-a" "af6dde8df23b3d10b45adb9f3b51b17293df8a2eb71b593a946bd22f06c9fcd0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "af6dde8df23b3d10b45adb9f3b51b17293df8a2eb71b593a946bd22f06c9fcd0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "af6dde8df23b3d10b45adb9f3b51b17293df8a2eb71b593a946bd22f06c9fcd0", kill_on_drop: false }` [INFO] [stdout] af6dde8df23b3d10b45adb9f3b51b17293df8a2eb71b593a946bd22f06c9fcd0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 08b54e4674dd13bb09fb91bb1c90b97f7443619d16597bdb71e42d0e068db4cb [INFO] running `Command { std: "docker" "start" "-a" "08b54e4674dd13bb09fb91bb1c90b97f7443619d16597bdb71e42d0e068db4cb", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling proc-macro2 v1.0.5 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling cc v1.0.45 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ryu v1.0.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling scopeguard v1.0.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling unicode-segmentation v1.3.0 [INFO] [stderr] Compiling bitflags v1.2.0 [INFO] [stderr] Compiling bio v0.31.0 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling fnv v1.0.6 [INFO] [stderr] Compiling number_prefix v0.3.0 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling error-chain v0.12.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling crossbeam-deque v0.7.1 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling termios v0.3.1 [INFO] [stderr] Compiling clicolors-control v1.0.1 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling backtrace-sys v0.1.31 [INFO] [stderr] Compiling rayon-core v1.6.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling rayon v1.2.0 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling backtrace v0.3.38 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling console v0.9.0 [INFO] [stderr] Compiling indicatif v0.12.0 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling snafu-derive v0.6.8 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling snafu v0.6.8 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling crispyr v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 59.47s [INFO] running `Command { std: "docker" "inspect" "08b54e4674dd13bb09fb91bb1c90b97f7443619d16597bdb71e42d0e068db4cb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "08b54e4674dd13bb09fb91bb1c90b97f7443619d16597bdb71e42d0e068db4cb", kill_on_drop: false }` [INFO] [stdout] 08b54e4674dd13bb09fb91bb1c90b97f7443619d16597bdb71e42d0e068db4cb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d2746b2c546d4f2e7a8289f4281f09f267ab798b3eb5e236210add4ab6534a71 [INFO] running `Command { std: "docker" "start" "-a" "d2746b2c546d4f2e7a8289f4281f09f267ab798b3eb5e236210add4ab6534a71", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling crispyr v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.46s [INFO] running `Command { std: "docker" "inspect" "d2746b2c546d4f2e7a8289f4281f09f267ab798b3eb5e236210add4ab6534a71", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d2746b2c546d4f2e7a8289f4281f09f267ab798b3eb5e236210add4ab6534a71", kill_on_drop: false }` [INFO] [stdout] d2746b2c546d4f2e7a8289f4281f09f267ab798b3eb5e236210add4ab6534a71 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 5844e97d66cabed66d996e3d0c14ee7d9f597eff956a8a0e736efd9cd4f3a618 [INFO] running `Command { std: "docker" "start" "-a" "5844e97d66cabed66d996e3d0c14ee7d9f597eff956a8a0e736efd9cd4f3a618", kill_on_drop: false }` [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/crispyr-70360d31996c3487) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/crispyr-df8f466c740a2cf8) [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stderr] Running tests/enzyme.rs (/opt/rustwide/target/debug/deps/enzyme-142c90c080e3cd5b) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test test_enzyme_cas9 ... ok [INFO] [stdout] test test_enzyme_unknown ... ok [INFO] [stdout] test test_enzyme_mad7 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running tests/index.rs (/opt/rustwide/target/debug/deps/index-f494378672784c90) [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test test_position_to_u64_forward_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_ref_no_pos ... ok [INFO] [stdout] test test_position_to_u64_forward_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_neg_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_neg_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_zeroes ... ok [INFO] [stdout] test test_position_to_u64_reverse_neg_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_neg_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_ref_no_pos ... ok [INFO] [stdout] test test_position_to_u64_reverse_zeroes ... ok [INFO] [stdout] test test_position_to_u64_reverse_pos_and_ref ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Running tests/iupac.rs (/opt/rustwide/target/debug/deps/iupac-cc07d246c3d2ce35) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stderr] Running tests/pam.rs (/opt/rustwide/target/debug/deps/pam-be39b116134af53d) [INFO] [stdout] test test_non_nucleotide_values ... ok [INFO] [stdout] test test_basic_nucleotides ... ok [INFO] [stdout] test test_degenerate_nucleotide ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test test_head_pam_matches ... ok [INFO] [stdout] test test_pam_lengths ... ok [INFO] [stdout] test test_pam_position ... ok [INFO] [stdout] test test_tail_pam_matches ... ok [INFO] [stdout] test test_enzyme_kmer_mad7 ... ok [INFO] [stdout] test test_to_string ... ok [INFO] [stdout] test test_tail_kmer ... ok [INFO] [stdout] test test_enzyme_kmer_mut_cas9 ... ok [INFO] [stdout] test test_head_kmer ... ok [INFO] [stdout] test test_enzyme_kmer_cas9 ... ok [INFO] [stdout] test test_empty_tail_pam_matches ... ok [INFO] [stdout] test test_empty_tail_pam_kmer_slice ... ok [INFO] [stdout] test test_empty_head_pam_matches ... ok [INFO] [stdout] test test_empty_head_pam_kmer_slice ... ok [INFO] [stderr] Doc-tests crispyr [INFO] [stdout] test test_enzyme_kmer_mut_mad7 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "5844e97d66cabed66d996e3d0c14ee7d9f597eff956a8a0e736efd9cd4f3a618", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5844e97d66cabed66d996e3d0c14ee7d9f597eff956a8a0e736efd9cd4f3a618", kill_on_drop: false }` [INFO] [stdout] 5844e97d66cabed66d996e3d0c14ee7d9f597eff956a8a0e736efd9cd4f3a618