[INFO] cloning repository https://github.com/Ebedthan/sabreur
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Ebedthan/sabreur" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8d8c3e69a2040276fef44ddbe66bcab9b7d98659
[INFO] testing Ebedthan/sabreur against try#ce59db7a1b1b012fb2793c4641c1bdecad7a128b for pr-85530
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur" "/workspace/builds/worker-11/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Ebedthan/sabreur on toolchain ce59db7a1b1b012fb2793c4641c1bdecad7a128b
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Ebedthan/sabreur
[INFO] finished tweaking git repo https://github.com/Ebedthan/sabreur
[INFO] tweaked toml for git repo https://github.com/Ebedthan/sabreur written to /workspace/builds/worker-11/source/Cargo.toml
[INFO] crate git repo https://github.com/Ebedthan/sabreur already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded niffler v2.3.2
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded statrs v0.13.0
[INFO] [stderr]   Downloaded bio-types v0.11.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bgzip v0.2.0
[INFO] [stderr]   Downloaded bio v0.33.0
[INFO] [stderr]   Downloaded cast v0.2.5
[INFO] [stderr]   Downloaded exitcode v1.1.2
[INFO] [stderr]   Downloaded xz2 v0.1.6
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 49689d61b44dbab1df969cf5ce43f29b9d9cbcf020888f96a6380259ee3db916
[INFO] running `Command { std: "docker" "start" "-a" "49689d61b44dbab1df969cf5ce43f29b9d9cbcf020888f96a6380259ee3db916", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "49689d61b44dbab1df969cf5ce43f29b9d9cbcf020888f96a6380259ee3db916", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "49689d61b44dbab1df969cf5ce43f29b9d9cbcf020888f96a6380259ee3db916", kill_on_drop: false }`
[INFO] [stdout] 49689d61b44dbab1df969cf5ce43f29b9d9cbcf020888f96a6380259ee3db916
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 47395e8a06d2243ab8b24a55cd3f57f4b7c230e3813f046304afb0060e00afb1
[INFO] running `Command { std: "docker" "start" "-a" "47395e8a06d2243ab8b24a55cd3f57f4b7c230e3813f046304afb0060e00afb1", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.26
[INFO] [stderr]    Compiling syn v1.0.69
[INFO] [stderr]    Compiling libc v0.2.93
[INFO] [stderr]    Compiling serde_derive v1.0.125
[INFO] [stderr]    Compiling cc v1.0.67
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]    Compiling serde v1.0.125
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling typenum v1.13.0
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]    Compiling regex-syntax v0.6.23
[INFO] [stderr]    Compiling anyhow v1.0.40
[INFO] [stderr]    Compiling bio v0.33.0
[INFO] [stderr]    Compiling itoa v0.4.7
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling strum v0.20.0
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling indexmap v1.6.2
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling flate2 v1.0.20
[INFO] [stderr]    Compiling aho-corasick v0.7.15
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.10+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling generic-array v0.13.3
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling regex v1.4.5
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling num-complex v0.3.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling bzip2 v0.4.2
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling nalgebra v0.19.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.24
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling enum-map v0.6.4
[INFO] [stderr]    Compiling thiserror v1.0.24
[INFO] [stderr]    Compiling bio-types v0.11.0
[INFO] [stderr]    Compiling bgzip v0.2.0
[INFO] [stderr]    Compiling niffler v2.3.2
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.15
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling statrs v0.13.0
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling sabreur v0.3.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 06s
[INFO] running `Command { std: "docker" "inspect" "47395e8a06d2243ab8b24a55cd3f57f4b7c230e3813f046304afb0060e00afb1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "47395e8a06d2243ab8b24a55cd3f57f4b7c230e3813f046304afb0060e00afb1", kill_on_drop: false }`
[INFO] [stdout] 47395e8a06d2243ab8b24a55cd3f57f4b7c230e3813f046304afb0060e00afb1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c53bedfac82a4dbba1463e02cd6e7ce610cb8e75c6cde738c61ef72a4af4d6fe
[INFO] running `Command { std: "docker" "start" "-a" "c53bedfac82a4dbba1463e02cd6e7ce610cb8e75c6cde738c61ef72a4af4d6fe", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde_json v1.0.64
[INFO] [stderr]    Compiling plotters-backend v0.3.0
[INFO] [stderr]    Compiling half v1.7.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.4
[INFO] [stderr]    Compiling memoffset v0.6.3
[INFO] [stderr]    Compiling rayon v1.5.0
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling getrandom v0.2.2
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling cast v0.2.5
[INFO] [stderr]    Compiling serde_cbor v0.11.1
[INFO] [stderr]    Compiling plotters-svg v0.3.0
[INFO] [stderr]    Compiling rand_core v0.6.2
[INFO] [stderr]    Compiling plotters v0.3.0
[INFO] [stderr]    Compiling criterion-plot v0.4.3
[INFO] [stderr]    Compiling rand_chacha v0.3.0
[INFO] [stderr]    Compiling rand v0.8.3
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.4
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling crossbeam-deque v0.8.0
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling rayon-core v1.9.0
[INFO] [stderr]    Compiling criterion v0.3.4
[INFO] [stderr]    Compiling sabreur v0.3.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 24.72s
[INFO] running `Command { std: "docker" "inspect" "c53bedfac82a4dbba1463e02cd6e7ce610cb8e75c6cde738c61ef72a4af4d6fe", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c53bedfac82a4dbba1463e02cd6e7ce610cb8e75c6cde738c61ef72a4af4d6fe", kill_on_drop: false }`
[INFO] [stdout] c53bedfac82a4dbba1463e02cd6e7ce610cb8e75c6cde738c61ef72a4af4d6fe
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ce59db7a1b1b012fb2793c4641c1bdecad7a128b" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d5605d678faffef951f3aba3be210f6c5edc3ff5ab201bb031c43e55f6f0c14d
[INFO] running `Command { std: "docker" "start" "-a" "d5605d678faffef951f3aba3be210f6c5edc3ff5ab201bb031c43e55f6f0c14d", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.15s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/sabreur-654344a7cedc6197)
[INFO] [stdout] 
[INFO] [stdout] running 20 tests
[INFO] [stdout] test utils::tests::test_bc_cmp_mismatch_not_ok ... ok
[INFO] [stdout] test utils::tests::test_to_compression_ext ... ok
[INFO] [stdout] test utils::tests::test_to_niffler_format ... ok
[INFO] [stdout] test utils::tests::test_split_by_tab ... ok
[INFO] [stdout] test utils::tests::test_read_file_content_is_ok ... ok
[INFO] [stdout] test utils::tests::test_get_file_type ... ok
[INFO] [stdout] test utils::tests::test_bc_cmp_ok ... ok
[INFO] [stdout] test utils::tests::test_to_niffler_level ... ok
[INFO] [stdout] test utils::tests::test_bc_cmp_mismatch_ok ... ok
[INFO] [stdout] test utils::tests::test_read_file ... ok
[INFO] [stdout] test utils::tests::test_bc_cmp_not_ok ... ok
[INFO] [stdout] test utils::tests::test_split_by_tab_not_ok ... ok
[INFO] [stdout] test utils::tests::test_write_to_fa_is_ok ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux_m1 ... ok
[INFO] [stdout] test utils::tests::test_write_to_fq_is_ok ... ok
[INFO] [stdout] test utils::tests::test_se_fq_demux ... ok
[INFO] [stdout] test utils::tests::test_se_fq_demux_m2 ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux_m2 ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux ... ok
[INFO] [stdout] test utils::tests::test_se_fq_demux_m1 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 20 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "d5605d678faffef951f3aba3be210f6c5edc3ff5ab201bb031c43e55f6f0c14d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d5605d678faffef951f3aba3be210f6c5edc3ff5ab201bb031c43e55f6f0c14d", kill_on_drop: false }`
[INFO] [stdout] d5605d678faffef951f3aba3be210f6c5edc3ff5ab201bb031c43e55f6f0c14d