[INFO] fetching crate openmm-sys 7.4.1... [INFO] testing openmm-sys-7.4.1 against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ad3072575105e25e814aab5fbc10c8b23710e81c5cfd5e2921bc8b372afd897d [INFO] running `Command { std: "docker" "start" "-a" "ad3072575105e25e814aab5fbc10c8b23710e81c5cfd5e2921bc8b372afd897d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ad3072575105e25e814aab5fbc10c8b23710e81c5cfd5e2921bc8b372afd897d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ad3072575105e25e814aab5fbc10c8b23710e81c5cfd5e2921bc8b372afd897d", kill_on_drop: false }` [INFO] [stdout] ad3072575105e25e814aab5fbc10c8b23710e81c5cfd5e2921bc8b372afd897d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b5419ac30e12c7e5ea839e551e27cd457a39ae394bbb08fede9fe3d7059d7896 [INFO] running `Command { std: "docker" "start" "-a" "b5419ac30e12c7e5ea839e551e27cd457a39ae394bbb08fede9fe3d7059d7896", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-4e95c6763ad41046/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-5389acf255a55a11/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-5389acf255a55a11/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5580e4f2ace0 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5580e4f2ace0 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5580e4f2ace0 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5580e4f2ace0 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5580e4f4ad6c - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x5580e4f27c15 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x5580e4f2d36b - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5580e4f2d36b - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5580e4f2d36b - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5580e4f2ce41 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5580e4f2da11 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x5580e4f2d517 - std::panicking::begin_panic_handler::{{closure}}::h95197ccd88846f7a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x5580e4f2b1bc - std::sys_common::backtrace::__rust_end_short_backtrace::h7641df9566f7b7d0 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5580e4f2d479 - rust_begin_unwind [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x5580e4ebac4b - std::panicking::begin_panic_fmt::hdc39c0cc0031e534 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:457:5 [INFO] [stderr] 15: 0x5580e4ec991c - cmake::fail::h43e2abe120a77939 [INFO] [stderr] 16: 0x5580e4ec9352 - cmake::run::h45a5242404e02c2a [INFO] [stderr] 17: 0x5580e4ec568d - cmake::Config::build::hf7c9481c1f87a709 [INFO] [stderr] 18: 0x5580e4ebe880 - build_script_build::main::h33c384fad423033a [INFO] [stderr] 19: 0x5580e4ec0613 - core::ops::function::FnOnce::call_once::h8bae8725cfbf0a53 [INFO] [stderr] 20: 0x5580e4ec0569 - std::sys_common::backtrace::__rust_begin_short_backtrace::he6ee666dbc6d9dc2 [INFO] [stderr] 21: 0x5580e4ec21a9 - std::rt::lang_start::{{closure}}::h25ece72eeb601d8f [INFO] [stderr] 22: 0x5580e4f2df09 - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x5580e4f2df09 - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 24: 0x5580e4f2df09 - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 25: 0x5580e4f2df09 - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:433:14 [INFO] [stderr] 26: 0x5580e4f2df09 - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:34:21 [INFO] [stderr] 27: 0x5580e4ec2191 - std::rt::lang_start::h80846cb13f6c248f [INFO] [stderr] 28: 0x5580e4ebf4b3 - main [INFO] [stderr] 29: 0x7f3c2f2650b3 - __libc_start_main [INFO] [stderr] 30: 0x5580e4ebbace - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "b5419ac30e12c7e5ea839e551e27cd457a39ae394bbb08fede9fe3d7059d7896", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b5419ac30e12c7e5ea839e551e27cd457a39ae394bbb08fede9fe3d7059d7896", kill_on_drop: false }` [INFO] [stdout] b5419ac30e12c7e5ea839e551e27cd457a39ae394bbb08fede9fe3d7059d7896