[INFO] fetching crate global-supertrees 0.1.0... [INFO] testing global-supertrees-0.1.0 against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530 [INFO] extracting crate global-supertrees 0.1.0 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate global-supertrees 0.1.0 on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate global-supertrees 0.1.0 [INFO] finished tweaking crates.io crate global-supertrees 0.1.0 [INFO] tweaked toml for crates.io crate global-supertrees 0.1.0 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rawpointer v0.1.0 [INFO] [stderr] Downloaded ndarray v0.12.1 [INFO] [stderr] Downloaded itertools v0.7.11 [INFO] [stderr] Downloaded matrixmultiply v0.1.15 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f9325553a705b3ef48e2cd862b6e4b3d0ab12f206d1bebaf59479f07aa3d667c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f9325553a705b3ef48e2cd862b6e4b3d0ab12f206d1bebaf59479f07aa3d667c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f9325553a705b3ef48e2cd862b6e4b3d0ab12f206d1bebaf59479f07aa3d667c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f9325553a705b3ef48e2cd862b6e4b3d0ab12f206d1bebaf59479f07aa3d667c", kill_on_drop: false }` [INFO] [stdout] f9325553a705b3ef48e2cd862b6e4b3d0ab12f206d1bebaf59479f07aa3d667c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b034f1142f8c041b799a29e4d5eab76a707bf85c6ab32bd614d42a317e0aaf0b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b034f1142f8c041b799a29e4d5eab76a707bf85c6ab32bd614d42a317e0aaf0b", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling syn v1.0.72 [INFO] [stderr] Compiling serde_derive v1.0.126 [INFO] [stderr] Compiling serde v1.0.126 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 20.77s [INFO] running `Command { std: "docker" "inspect" "b034f1142f8c041b799a29e4d5eab76a707bf85c6ab32bd614d42a317e0aaf0b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b034f1142f8c041b799a29e4d5eab76a707bf85c6ab32bd614d42a317e0aaf0b", kill_on_drop: false }` [INFO] [stdout] b034f1142f8c041b799a29e4d5eab76a707bf85c6ab32bd614d42a317e0aaf0b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9125aecf11e7a517719c560b5625157f225a8d1493303f8570c358add6f6a19f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9125aecf11e7a517719c560b5625157f225a8d1493303f8570c358add6f6a19f", kill_on_drop: false }` [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.57s [INFO] running `Command { std: "docker" "inspect" "9125aecf11e7a517719c560b5625157f225a8d1493303f8570c358add6f6a19f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9125aecf11e7a517719c560b5625157f225a8d1493303f8570c358add6f6a19f", kill_on_drop: false }` [INFO] [stdout] 9125aecf11e7a517719c560b5625157f225a8d1493303f8570c358add6f6a19f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 441685400c01a1a73abdc6d18ce518584911d5c1e336ec057ca017f7c8e223d5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "441685400c01a1a73abdc6d18ce518584911d5c1e336ec057ca017f7c8e223d5", kill_on_drop: false }` [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:54:92 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition! [INFO] [stderr] = note: for more information, see issue #80165 [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:61:82 [INFO] [stderr] | [INFO] [stderr] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition! [INFO] [stderr] = note: for more information, see issue #80165 [INFO] [stderr] [INFO] [stderr] warning: unused import: `rayon::prelude` [INFO] [stderr] --> src/tree_merging.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use rayon::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `trees` [INFO] [stderr] --> src/main.rs:98:9 [INFO] [stderr] | [INFO] [stderr] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:10:9 [INFO] [stderr] | [INFO] [stderr] 10 | let distance_matrices: Vec = [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `merge_distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:102:4 [INFO] [stderr] | [INFO] [stderr] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 6 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/global_supertrees-a74f27e2cb6970ec) [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test tests::tests::test_find_first_zero ... ok [INFO] [stdout] test tests::tests::test_find_first_common_ancestor ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_3 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_2 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_1 ... ok [INFO] [stdout] test tests::tests::test_load_tree_file ... ok [INFO] [stdout] test tests::tests::test_get_levels_from_root ... ok [INFO] [stdout] test tests::tests::test_to_dot ... ok [INFO] [stdout] test tests::tests::test_merge_organisms ... FAILED [INFO] [stdout] test tests::tests::test_batch_id_tax_mapping ... FAILED [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium_nested ... ok [INFO] [stdout] test tests::tests::test_get_partial_tree ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_simple ... ok [INFO] [stdout] test tests::tests::test_neighbour_joining ... ok [INFO] [stdout] test tests::tests::test_tree_merging ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_organisms stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_organisms' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x563ef35107a0 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x563ef35107a0 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x563ef35107a0 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x563ef35107a0 - ::fmt::h767e17e1aa7df6a8 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x563ef3534fdc - core::fmt::write::h7aa6cd0067dca82a [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/fmt/mod.rs:1110:17 [INFO] [stdout] 5: 0x563ef350d525 - std::io::Write::write_fmt::h6f1a9b91376a1376 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/io/mod.rs:1584:15 [INFO] [stdout] 6: 0x563ef351297b - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x563ef351297b - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x563ef351297b - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x563ef351248c - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x563ef3513021 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x563ef3512b27 - std::panicking::begin_panic_handler::{{closure}}::h95197ccd88846f7a [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x563ef3510c7c - std::sys_common::backtrace::__rust_end_short_backtrace::h7641df9566f7b7d0 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x563ef3512a89 - rust_begin_unwind [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x563ef31d1991 - core::panicking::panic_fmt::hbe99dddd3092ba3c [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x563ef31d1a83 - core::result::unwrap_failed::hf79563fef9d11ab8 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/result.rs:1355:5 [INFO] [stdout] 16: 0x563ef328a9f0 - core::result::Result::expect::hd4a46aecdea5427b [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/result.rs:997:23 [INFO] [stdout] 17: 0x563ef3241058 - global_supertrees::uniprot::load_mapping_file::he44cbf25e88345fe [INFO] [stdout] at /opt/rustwide/workdir/src/uniprot.rs:34:13 [INFO] [stdout] 18: 0x563ef325020a - global_supertrees::tests::tests::test_merge_organisms::h27aa7cac8e1e455d [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:237:26 [INFO] [stdout] 19: 0x563ef32501ba - global_supertrees::tests::tests::test_merge_organisms::{{closure}}::h6fdb591e3ab5abaf [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:235:5 [INFO] [stdout] 20: 0x563ef321967e - core::ops::function::FnOnce::call_once::h2d4201bb52d6d877 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x563ef32c7603 - core::ops::function::FnOnce::call_once::h673fbe3f96486fd2 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x563ef32c7603 - test::__rust_begin_short_backtrace::h8eedc24e104ef6a0 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/test/src/lib.rs:577:5 [INFO] [stdout] 23: 0x563ef32c60b0 - as core::ops::function::FnOnce>::call_once::h028d0969d3f94d78 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/alloc/src/boxed.rs:1575:9 [INFO] [stdout] 24: 0x563ef32c60b0 - as core::ops::function::FnOnce<()>>::call_once::h7634b01590b1722b [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:346:9 [INFO] [stdout] 25: 0x563ef32c60b0 - std::panicking::try::do_call::hf74f869706dec63b [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 26: 0x563ef32c60b0 - std::panicking::try::hd0b7346ebfaaae44 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 27: 0x563ef32c60b0 - std::panic::catch_unwind::hdbf6904f7c253080 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:433:14 [INFO] [stdout] 28: 0x563ef32c60b0 - test::run_test_in_process::h87e95a014ac91067 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/test/src/lib.rs:600:18 [INFO] [stdout] 29: 0x563ef32c60b0 - test::run_test::run_test_inner::{{closure}}::hdd69ae44aaab3470 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/test/src/lib.rs:492:39 [INFO] [stdout] 30: 0x563ef32a1382 - test::run_test::run_test_inner::{{closure}}::hc159305704d5b68a [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/test/src/lib.rs:519:37 [INFO] [stdout] 31: 0x563ef32a1382 - std::sys_common::backtrace::__rust_begin_short_backtrace::h33d8a8ad5f788fcc [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x563ef32a50f8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h6181011ddf4b8353 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/thread/mod.rs:481:17 [INFO] [stdout] 33: 0x563ef32a50f8 - as core::ops::function::FnOnce<()>>::call_once::hf924ea0a0f25a1c0 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:346:9 [INFO] [stdout] 34: 0x563ef32a50f8 - std::panicking::try::do_call::hd58061792d05fa5c [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 35: 0x563ef32a50f8 - std::panicking::try::h3080747417e5af37 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 36: 0x563ef32a50f8 - std::panic::catch_unwind::hfeba515dcf36cb66 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:433:14 [INFO] [stdout] 37: 0x563ef32a50f8 - std::thread::Builder::spawn_unchecked::{{closure}}::h29d57a62faff749b [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/thread/mod.rs:480:30 [INFO] [stdout] 38: 0x563ef32a50f8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h44709d312d2a9c59 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x563ef3517c37 - as core::ops::function::FnOnce>::call_once::h902e2cf6655e1b0c [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/alloc/src/boxed.rs:1575:9 [INFO] [stdout] 40: 0x563ef3517c37 - as core::ops::function::FnOnce>::call_once::h893a5452154309d1 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/alloc/src/boxed.rs:1575:9 [INFO] [stdout] 41: 0x563ef3517c37 - std::sys::unix::thread::Thread::new::thread_start::hdedcb57c96ab37cd [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys/unix/thread.rs:71:17 [INFO] [stdout] 42: 0x7f4d4f352609 - start_thread [INFO] [stdout] 43: 0x7f4d4f124293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_batch_id_tax_mapping stdout ---- [INFO] [stdout] thread 'tests::tests::test_batch_id_tax_mapping' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x563ef35107a0 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x563ef35107a0 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x563ef35107a0 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x563ef35107a0 - ::fmt::h767e17e1aa7df6a8 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x563ef3534fdc - core::fmt::write::h7aa6cd0067dca82a [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/fmt/mod.rs:1110:17 [INFO] [stdout] 5: 0x563ef350d525 - std::io::Write::write_fmt::h6f1a9b91376a1376 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/io/mod.rs:1584:15 [INFO] [stdout] 6: 0x563ef351297b - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x563ef351297b - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x563ef351297b - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x563ef351248c - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x563ef3513021 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x563ef3512b27 - std::panicking::begin_panic_handler::{{closure}}::h95197ccd88846f7a [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x563ef3510c7c - std::sys_common::backtrace::__rust_end_short_backtrace::h7641df9566f7b7d0 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x563ef3512a89 - rust_begin_unwind [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x563ef31d1991 - core::panicking::panic_fmt::hbe99dddd3092ba3c [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x563ef31d1a83 - core::result::unwrap_failed::hf79563fef9d11ab8 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/result.rs:1355:5 [INFO] [stdout] 16: 0x563ef328a9f0 - core::result::Result::expect::hd4a46aecdea5427b [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/result.rs:997:23 [INFO] [stdout] 17: 0x563ef3241058 - global_supertrees::uniprot::load_mapping_file::he44cbf25e88345fe [INFO] [stdout] at /opt/rustwide/workdir/src/uniprot.rs:34:13 [INFO] [stdout] 18: 0x563ef324ff9a - global_supertrees::tests::tests::test_batch_id_tax_mapping::h41ef320f378bfdff [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:230:26 [INFO] [stdout] 19: 0x563ef324fe4a - global_supertrees::tests::tests::test_batch_id_tax_mapping::{{closure}}::h635b6abdd703e87c [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:227:5 [INFO] [stdout] 20: 0x563ef321963e - core::ops::function::FnOnce::call_once::h2cdcb14cfbe0c452 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x563ef32c7603 - core::ops::function::FnOnce::call_once::h673fbe3f96486fd2 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x563ef32c7603 - test::__rust_begin_short_backtrace::h8eedc24e104ef6a0 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/test/src/lib.rs:577:5 [INFO] [stdout] 23: 0x563ef32c60b0 - as core::ops::function::FnOnce>::call_once::h028d0969d3f94d78 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/alloc/src/boxed.rs:1575:9 [INFO] [stdout] 24: 0x563ef32c60b0 - as core::ops::function::FnOnce<()>>::call_once::h7634b01590b1722b [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:346:9 [INFO] [stdout] 25: 0x563ef32c60b0 - std::panicking::try::do_call::hf74f869706dec63b [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 26: 0x563ef32c60b0 - std::panicking::try::hd0b7346ebfaaae44 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 27: 0x563ef32c60b0 - std::panic::catch_unwind::hdbf6904f7c253080 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:433:14 [INFO] [stdout] 28: 0x563ef32c60b0 - test::run_test_in_process::h87e95a014ac91067 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/test/src/lib.rs:600:18 [INFO] [stdout] 29: 0x563ef32c60b0 - test::run_test::run_test_inner::{{closure}}::hdd69ae44aaab3470 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/test/src/lib.rs:492:39 [INFO] [stdout] 30: 0x563ef32a1382 - test::run_test::run_test_inner::{{closure}}::hc159305704d5b68a [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/test/src/lib.rs:519:37 [INFO] [stdout] 31: 0x563ef32a1382 - std::sys_common::backtrace::__rust_begin_short_backtrace::h33d8a8ad5f788fcc [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x563ef32a50f8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h6181011ddf4b8353 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/thread/mod.rs:481:17 [INFO] [stdout] 33: 0x563ef32a50f8 - as core::ops::function::FnOnce<()>>::call_once::hf924ea0a0f25a1c0 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:346:9 [INFO] [stdout] 34: 0x563ef32a50f8 - std::panicking::try::do_call::hd58061792d05fa5c [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 35: 0x563ef32a50f8 - std::panicking::try::h3080747417e5af37 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 36: 0x563ef32a50f8 - std::panic::catch_unwind::hfeba515dcf36cb66 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:433:14 [INFO] [stdout] 37: 0x563ef32a50f8 - std::thread::Builder::spawn_unchecked::{{closure}}::h29d57a62faff749b [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/thread/mod.rs:480:30 [INFO] [stdout] 38: 0x563ef32a50f8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h44709d312d2a9c59 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x563ef3517c37 - as core::ops::function::FnOnce>::call_once::h902e2cf6655e1b0c [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/alloc/src/boxed.rs:1575:9 [INFO] [stdout] 40: 0x563ef3517c37 - as core::ops::function::FnOnce>::call_once::h893a5452154309d1 [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/alloc/src/boxed.rs:1575:9 [INFO] [stdout] 41: 0x563ef3517c37 - std::sys::unix::thread::Thread::new::thread_start::hdedcb57c96ab37cd [INFO] [stdout] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys/unix/thread.rs:71:17 [INFO] [stdout] 42: 0x7f4d4f352609 - start_thread [INFO] [stdout] 43: 0x7f4d4f124293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::tests::test_batch_id_tax_mapping [INFO] [stdout] tests::tests::test_merge_organisms [INFO] [stdout] [INFO] [stdout] test result: FAILED. 14 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.33s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin global-supertrees' [INFO] running `Command { std: "docker" "inspect" "441685400c01a1a73abdc6d18ce518584911d5c1e336ec057ca017f7c8e223d5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "441685400c01a1a73abdc6d18ce518584911d5c1e336ec057ca017f7c8e223d5", kill_on_drop: false }` [INFO] [stdout] 441685400c01a1a73abdc6d18ce518584911d5c1e336ec057ca017f7c8e223d5