[INFO] fetching crate gchemol-geometry 0.0.39...
[INFO] testing gchemol-geometry-0.0.39 against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530
[INFO] extracting crate gchemol-geometry 0.0.39 into /workspace/builds/worker-4/source
[INFO] validating manifest of crates.io crate gchemol-geometry 0.0.39 on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol-geometry 0.0.39
[INFO] finished tweaking crates.io crate gchemol-geometry 0.0.39
[INFO] tweaked toml for crates.io crate gchemol-geometry 0.0.39 written to /workspace/builds/worker-4/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] af847d805c73f1b74c178c3c748339e8abb465b6aa6fc0faa7b8b6b9f407168f
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "af847d805c73f1b74c178c3c748339e8abb465b6aa6fc0faa7b8b6b9f407168f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "af847d805c73f1b74c178c3c748339e8abb465b6aa6fc0faa7b8b6b9f407168f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "af847d805c73f1b74c178c3c748339e8abb465b6aa6fc0faa7b8b6b9f407168f", kill_on_drop: false }`
[INFO] [stdout] af847d805c73f1b74c178c3c748339e8abb465b6aa6fc0faa7b8b6b9f407168f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 90328565af6bbb1ce744a7e7ae949d3833f71675b531098a0e4615a6b2940172
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "90328565af6bbb1ce744a7e7ae949d3833f71675b531098a0e4615a6b2940172", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling typenum v1.13.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling gchemol-gut v0.1.5
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling generic-array v0.13.3
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling nalgebra v0.20.0
[INFO] [stderr]    Compiling vecfx v0.1.2
[INFO] [stderr]    Compiling gchemol-geometry v0.0.39 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `crate::base::euclidean_distance`
[INFO] [stdout]  --> src/random.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::base::euclidean_distance;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `prepare_test_data`
[INFO] [stdout]    --> src/alignment/qcprot.rs:460:15
[INFO] [stdout]     |
[INFO] [stdout] 460 | pub(crate) fn prepare_test_data() -> (Vec<[f64; 3]>, Vec<[f64; 3]>, Vec<f64>) {
[INFO] [stdout]     |               ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `euclidean_distance`
[INFO] [stdout]   --> src/base.rs:13:8
[INFO] [stdout]    |
[INFO] [stdout] 13 | pub fn euclidean_distance(p1: [f64; 3], p2: [f64; 3]) -> f64 {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `weighted_center_of_geometry`
[INFO] [stdout]   --> src/base.rs:24:8
[INFO] [stdout]    |
[INFO] [stdout] 24 | pub fn weighted_center_of_geometry(positions: &[[f64; 3]], weights: &[f64]) -> Result<Vector3f> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias is never used: `Point3D`
[INFO] [stdout]   --> src/random.rs:17:1
[INFO] [stdout]    |
[INFO] [stdout] 17 | type Point3D = [f64; 3];
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias is never used: `Points`
[INFO] [stdout]   --> src/random.rs:18:1
[INFO] [stdout]    |
[INFO] [stdout] 18 | type Points = Vec<Point3D>;
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_point_within_sphere`
[INFO] [stdout]   --> src/random.rs:24:8
[INFO] [stdout]    |
[INFO] [stdout] 24 | pub fn rand_point_within_sphere(radius: f64) -> Point3D {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_point_on_sphere`
[INFO] [stdout]   --> src/random.rs:49:8
[INFO] [stdout]    |
[INFO] [stdout] 49 | pub fn rand_point_on_sphere(radius: f64) -> Point3D {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_points_within_sphere`
[INFO] [stdout]   --> src/random.rs:76:8
[INFO] [stdout]    |
[INFO] [stdout] 76 | pub fn rand_points_within_sphere(radius: f64, npts: usize) -> Points {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_rotate`
[INFO] [stdout]    --> src/random.rs:102:8
[INFO] [stdout]     |
[INFO] [stdout] 102 | pub fn rand_rotate(points: &Points) -> Points {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias is never used: `Point3`
[INFO] [stdout]   --> src/transform.rs:15:1
[INFO] [stdout]    |
[INFO] [stdout] 15 | type Point3 = [f64; 3];
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias is never used: `Points`
[INFO] [stdout]   --> src/transform.rs:16:1
[INFO] [stdout]    |
[INFO] [stdout] 16 | type Points = Vec<Point3>;
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `translate`
[INFO] [stdout]   --> src/transform.rs:19:8
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub fn translate(points: &mut Points, loc: Point3) {
[INFO] [stdout]    |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `close_contact`
[INFO] [stdout]   --> src/transform.rs:28:8
[INFO] [stdout]    |
[INFO] [stdout] 28 | pub fn close_contact(points: &Points) -> bool {
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `get_distance_matrix`
[INFO] [stdout]   --> src/transform.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 | pub fn get_distance_matrix(points: &[Point3]) -> Vec<Vec<f64>> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rotate_about_x_axis`
[INFO] [stdout]   --> src/transform.rs:68:8
[INFO] [stdout]    |
[INFO] [stdout] 68 | pub fn rotate_about_x_axis(points: &Points, angle: f64, center: Point3) -> Points {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `mirror_invert`
[INFO] [stdout]   --> src/transform.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 84 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `point_invert`
[INFO] [stdout]   --> src/transform.rs:91:8
[INFO] [stdout]    |
[INFO] [stdout] 91 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 18 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 31.68s
[INFO] running `Command { std: "docker" "inspect" "90328565af6bbb1ce744a7e7ae949d3833f71675b531098a0e4615a6b2940172", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "90328565af6bbb1ce744a7e7ae949d3833f71675b531098a0e4615a6b2940172", kill_on_drop: false }`
[INFO] [stdout] 90328565af6bbb1ce744a7e7ae949d3833f71675b531098a0e4615a6b2940172
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 5ee65cd27983d9b09b61cad80918191da6d1ecfb9c4f5e02809240816efa16ee
[INFO] running `Command { std: "docker" "start" "-a" "5ee65cd27983d9b09b61cad80918191da6d1ecfb9c4f5e02809240816efa16ee", kill_on_drop: false }`
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stdout] warning: unused import: `crate::base::euclidean_distance`
[INFO] [stdout]  --> src/random.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::base::euclidean_distance;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `prepare_test_data`
[INFO] [stdout]    --> src/alignment/qcprot.rs:460:15
[INFO] [stdout]     |
[INFO] [stdout] 460 | pub(crate) fn prepare_test_data() -> (Vec<[f64; 3]>, Vec<[f64; 3]>, Vec<f64>) {
[INFO] [stdout]     |               ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `euclidean_distance`
[INFO] [stdout]   --> src/base.rs:13:8
[INFO] [stdout]    |
[INFO] [stdout] 13 | pub fn euclidean_distance(p1: [f64; 3], p2: [f64; 3]) -> f64 {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `weighted_center_of_geometry`
[INFO] [stdout]   --> src/base.rs:24:8
[INFO] [stdout]    |
[INFO] [stdout] 24 | pub fn weighted_center_of_geometry(positions: &[[f64; 3]], weights: &[f64]) -> Result<Vector3f> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias is never used: `Point3D`
[INFO] [stdout]   --> src/random.rs:17:1
[INFO] [stdout]    |
[INFO] [stdout] 17 | type Point3D = [f64; 3];
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias is never used: `Points`
[INFO] [stdout]   --> src/random.rs:18:1
[INFO] [stdout]    |
[INFO] [stdout] 18 | type Points = Vec<Point3D>;
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_point_within_sphere`
[INFO] [stdout]   --> src/random.rs:24:8
[INFO] [stdout]    |
[INFO] [stdout] 24 | pub fn rand_point_within_sphere(radius: f64) -> Point3D {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_point_on_sphere`
[INFO] [stdout]   --> src/random.rs:49:8
[INFO] [stdout]    |
[INFO] [stdout] 49 | pub fn rand_point_on_sphere(radius: f64) -> Point3D {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_points_within_sphere`
[INFO] [stdout]   --> src/random.rs:76:8
[INFO] [stdout]    |
[INFO] [stdout] 76 | pub fn rand_points_within_sphere(radius: f64, npts: usize) -> Points {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_rotate`
[INFO] [stdout]    --> src/random.rs:102:8
[INFO] [stdout]     |
[INFO] [stdout] 102 | pub fn rand_rotate(points: &Points) -> Points {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias is never used: `Point3`
[INFO] [stdout]   --> src/transform.rs:15:1
[INFO] [stdout]    |
[INFO] [stdout] 15 | type Point3 = [f64; 3];
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias is never used: `Points`
[INFO] [stdout]   --> src/transform.rs:16:1
[INFO] [stdout]    |
[INFO] [stdout] 16 | type Points = Vec<Point3>;
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `translate`
[INFO] [stdout]   --> src/transform.rs:19:8
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub fn translate(points: &mut Points, loc: Point3) {
[INFO] [stdout]    |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `close_contact`
[INFO] [stdout]   --> src/transform.rs:28:8
[INFO] [stdout]    |
[INFO] [stdout] 28 | pub fn close_contact(points: &Points) -> bool {
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `get_distance_matrix`
[INFO] [stdout]   --> src/transform.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 | pub fn get_distance_matrix(points: &[Point3]) -> Vec<Vec<f64>> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rotate_about_x_axis`
[INFO] [stdout]   --> src/transform.rs:68:8
[INFO] [stdout]    |
[INFO] [stdout] 68 | pub fn rotate_about_x_axis(points: &Points, angle: f64, center: Point3) -> Points {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `mirror_invert`
[INFO] [stdout]   --> src/transform.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 84 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `point_invert`
[INFO] [stdout]   --> src/transform.rs:91:8
[INFO] [stdout]    |
[INFO] [stdout] 91 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 18 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling rand_core v0.6.2
[INFO] [stderr]    Compiling rand_chacha v0.3.0
[INFO] [stderr]    Compiling rand v0.8.3
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling gchemol-geometry v0.0.39 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `trans`
[INFO] [stdout]    --> src/alignment/qcprot.rs:491:16
[INFO] [stdout]     |
[INFO] [stdout] 491 |     let (rmsd, trans, rot) = calc_rmsd_rotational_matrix(&mut frag_a, &mut frag_b, Some(&weights));
[INFO] [stdout]     |                ^^^^^ help: if this is intentional, prefix it with an underscore: `_trans`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_point_within_sphere`
[INFO] [stdout]   --> src/random.rs:24:8
[INFO] [stdout]    |
[INFO] [stdout] 24 | pub fn rand_point_within_sphere(radius: f64) -> Point3D {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `rand_points_within_sphere`
[INFO] [stdout]   --> src/random.rs:76:8
[INFO] [stdout]    |
[INFO] [stdout] 76 | pub fn rand_points_within_sphere(radius: f64, npts: usize) -> Points {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `translate`
[INFO] [stdout]   --> src/transform.rs:19:8
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub fn translate(points: &mut Points, loc: Point3) {
[INFO] [stdout]    |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `close_contact`
[INFO] [stdout]   --> src/transform.rs:28:8
[INFO] [stdout]    |
[INFO] [stdout] 28 | pub fn close_contact(points: &Points) -> bool {
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `get_distance_matrix`
[INFO] [stdout]   --> src/transform.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 | pub fn get_distance_matrix(points: &[Point3]) -> Vec<Vec<f64>> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `mirror_invert`
[INFO] [stdout]   --> src/transform.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 84 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `point_invert`
[INFO] [stdout]   --> src/transform.rs:91:8
[INFO] [stdout]    |
[INFO] [stdout] 91 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 8 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 7.50s
[INFO] running `Command { std: "docker" "inspect" "5ee65cd27983d9b09b61cad80918191da6d1ecfb9c4f5e02809240816efa16ee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5ee65cd27983d9b09b61cad80918191da6d1ecfb9c4f5e02809240816efa16ee", kill_on_drop: false }`
[INFO] [stdout] 5ee65cd27983d9b09b61cad80918191da6d1ecfb9c4f5e02809240816efa16ee
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] a510d9257a1f1529d1c97d7e08a90078c8e0b5a35947ec47cc131b910684085b
[INFO] running `Command { std: "docker" "start" "-a" "a510d9257a1f1529d1c97d7e08a90078c8e0b5a35947ec47cc131b910684085b", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `crate::base::euclidean_distance`
[INFO] [stderr]  --> src/random.rs:8:5
[INFO] [stderr]   |
[INFO] [stderr] 8 | use crate::base::euclidean_distance;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `prepare_test_data`
[INFO] [stderr]    --> src/alignment/qcprot.rs:460:15
[INFO] [stderr]     |
[INFO] [stderr] 460 | pub(crate) fn prepare_test_data() -> (Vec<[f64; 3]>, Vec<[f64; 3]>, Vec<f64>) {
[INFO] [stderr]     |               ^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `euclidean_distance`
[INFO] [stderr]   --> src/base.rs:13:8
[INFO] [stderr]    |
[INFO] [stderr] 13 | pub fn euclidean_distance(p1: [f64; 3], p2: [f64; 3]) -> f64 {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `weighted_center_of_geometry`
[INFO] [stderr]   --> src/base.rs:24:8
[INFO] [stderr]    |
[INFO] [stderr] 24 | pub fn weighted_center_of_geometry(positions: &[[f64; 3]], weights: &[f64]) -> Result<Vector3f> {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: type alias is never used: `Point3D`
[INFO] [stderr]   --> src/random.rs:17:1
[INFO] [stderr]    |
[INFO] [stderr] 17 | type Point3D = [f64; 3];
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: type alias is never used: `Points`
[INFO] [stderr]   --> src/random.rs:18:1
[INFO] [stderr]    |
[INFO] [stderr] 18 | type Points = Vec<Point3D>;
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `rand_point_within_sphere`
[INFO] [stderr]   --> src/random.rs:24:8
[INFO] [stderr]    |
[INFO] [stderr] 24 | pub fn rand_point_within_sphere(radius: f64) -> Point3D {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `rand_point_on_sphere`
[INFO] [stderr]   --> src/random.rs:49:8
[INFO] [stderr]    |
[INFO] [stderr] 49 | pub fn rand_point_on_sphere(radius: f64) -> Point3D {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `rand_points_within_sphere`
[INFO] [stderr]   --> src/random.rs:76:8
[INFO] [stderr]    |
[INFO] [stderr] 76 | pub fn rand_points_within_sphere(radius: f64, npts: usize) -> Points {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `rand_rotate`
[INFO] [stderr]    --> src/random.rs:102:8
[INFO] [stderr]     |
[INFO] [stderr] 102 | pub fn rand_rotate(points: &Points) -> Points {
[INFO] [stderr]     |        ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: type alias is never used: `Point3`
[INFO] [stderr]   --> src/transform.rs:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | type Point3 = [f64; 3];
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: type alias is never used: `Points`
[INFO] [stderr]   --> src/transform.rs:16:1
[INFO] [stderr]    |
[INFO] [stderr] 16 | type Points = Vec<Point3>;
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `translate`
[INFO] [stderr]   --> src/transform.rs:19:8
[INFO] [stderr]    |
[INFO] [stderr] 19 | pub fn translate(points: &mut Points, loc: Point3) {
[INFO] [stderr]    |        ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `close_contact`
[INFO] [stderr]   --> src/transform.rs:28:8
[INFO] [stderr]    |
[INFO] [stderr] 28 | pub fn close_contact(points: &Points) -> bool {
[INFO] [stderr]    |        ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `get_distance_matrix`
[INFO] [stderr]   --> src/transform.rs:50:8
[INFO] [stderr]    |
[INFO] [stderr] 50 | pub fn get_distance_matrix(points: &[Point3]) -> Vec<Vec<f64>> {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `rotate_about_x_axis`
[INFO] [stderr]   --> src/transform.rs:68:8
[INFO] [stderr]    |
[INFO] [stderr] 68 | pub fn rotate_about_x_axis(points: &Points, angle: f64, center: Point3) -> Points {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `mirror_invert`
[INFO] [stderr]   --> src/transform.rs:84:8
[INFO] [stderr]    |
[INFO] [stderr] 84 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stderr]    |        ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `point_invert`
[INFO] [stderr]   --> src/transform.rs:91:8
[INFO] [stderr]    |
[INFO] [stderr] 91 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stderr]    |        ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: 18 warnings emitted
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `trans`
[INFO] [stderr]    --> src/alignment/qcprot.rs:491:16
[INFO] [stderr]     |
[INFO] [stderr] 491 |     let (rmsd, trans, rot) = calc_rmsd_rotational_matrix(&mut frag_a, &mut frag_b, Some(&weights));
[INFO] [stderr]     |                ^^^^^ help: if this is intentional, prefix it with an underscore: `_trans`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `rand_point_within_sphere`
[INFO] [stderr]   --> src/random.rs:24:8
[INFO] [stderr]    |
[INFO] [stderr] 24 | pub fn rand_point_within_sphere(radius: f64) -> Point3D {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `rand_points_within_sphere`
[INFO] [stderr]   --> src/random.rs:76:8
[INFO] [stderr]    |
[INFO] [stderr] 76 | pub fn rand_points_within_sphere(radius: f64, npts: usize) -> Points {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `translate`
[INFO] [stderr]   --> src/transform.rs:19:8
[INFO] [stderr]    |
[INFO] [stderr] 19 | pub fn translate(points: &mut Points, loc: Point3) {
[INFO] [stderr]    |        ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `close_contact`
[INFO] [stderr]   --> src/transform.rs:28:8
[INFO] [stderr]    |
[INFO] [stderr] 28 | pub fn close_contact(points: &Points) -> bool {
[INFO] [stderr]    |        ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `get_distance_matrix`
[INFO] [stderr]   --> src/transform.rs:50:8
[INFO] [stderr]    |
[INFO] [stderr] 50 | pub fn get_distance_matrix(points: &[Point3]) -> Vec<Vec<f64>> {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `mirror_invert`
[INFO] [stderr]   --> src/transform.rs:84:8
[INFO] [stderr]    |
[INFO] [stderr] 84 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stderr]    |        ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `point_invert`
[INFO] [stderr]   --> src/transform.rs:91:8
[INFO] [stderr]    |
[INFO] [stderr] 91 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec {
[INFO] [stderr]    |        ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: 8 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/gchemol_geometry-d4e8407c7462612b)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stderr]    Doc-tests gchemol-geometry
[INFO] [stdout] test alignment::qcprot::test_qcprot ... ok
[INFO] [stdout] test alignment::test_alignment ... ok
[INFO] [stdout] test base::test_weighted_center_of_geometry ... ok
[INFO] [stdout] test random::test_rand_rotate ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "a510d9257a1f1529d1c97d7e08a90078c8e0b5a35947ec47cc131b910684085b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a510d9257a1f1529d1c97d7e08a90078c8e0b5a35947ec47cc131b910684085b", kill_on_drop: false }`
[INFO] [stdout] a510d9257a1f1529d1c97d7e08a90078c8e0b5a35947ec47cc131b910684085b