[INFO] fetching crate flann-sys 0.1.0... [INFO] testing flann-sys-0.1.0 against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9ff51f764c63c8c2f1ec92f7a05d91be37e290fc30c48ccd208be28d9624d4de [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9ff51f764c63c8c2f1ec92f7a05d91be37e290fc30c48ccd208be28d9624d4de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9ff51f764c63c8c2f1ec92f7a05d91be37e290fc30c48ccd208be28d9624d4de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9ff51f764c63c8c2f1ec92f7a05d91be37e290fc30c48ccd208be28d9624d4de", kill_on_drop: false }` [INFO] [stdout] 9ff51f764c63c8c2f1ec92f7a05d91be37e290fc30c48ccd208be28d9624d4de [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 06620312bd8a9f9a8c27a20dad6793505caaa126399a47d2053f526296966d24 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "06620312bd8a9f9a8c27a20dad6793505caaa126399a47d2053f526296966d24", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.95 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling cc v1.0.68 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-f5c3b4b09c8c5b6d/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-4299f557ffa04b7a/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-4299f557ffa04b7a/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-4299f557ffa04b7a/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56092cce1170 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x56092cce1170 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x56092cce1170 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x56092cce1170 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x56092cd06e4c - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x56092ccdda55 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x56092cce38db - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x56092cce38db - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x56092cce38db - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x56092cce33b1 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x56092cce3f81 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x56092cce3a87 - std::panicking::begin_panic_handler::{{closure}}::h95197ccd88846f7a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x56092cce164c - std::sys_common::backtrace::__rust_end_short_backtrace::h7641df9566f7b7d0 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x56092cce39e9 - rust_begin_unwind [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x56092c7f7beb - std::panicking::begin_panic_fmt::hdc39c0cc0031e534 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:457:5 [INFO] [stderr] 15: 0x56092c803683 - cmake::fail::h2ddf44b1720abb19 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] 16: 0x56092c803091 - cmake::run::he05153a1759a14d4 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9 [INFO] [stderr] 17: 0x56092c7ffa15 - cmake::Config::build::h396d956a8d3f0acc [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:707:13 [INFO] [stderr] 18: 0x56092c7fa9d5 - build_script_build::main::h96da154613417f4a [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30:19 [INFO] [stderr] 19: 0x56092c7f971b - core::ops::function::FnOnce::call_once::h56103e4ff9ee326f [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x56092c7f9f2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h05846373747202f3 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 21: 0x56092c7f9c61 - std::rt::lang_start::{{closure}}::ha77f85cd4364db13 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:49:18 [INFO] [stderr] 22: 0x56092cce4479 - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x56092cce4479 - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 24: 0x56092cce4479 - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 25: 0x56092cce4479 - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:433:14 [INFO] [stderr] 26: 0x56092cce4479 - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:34:21 [INFO] [stderr] 27: 0x56092c7f9c40 - std::rt::lang_start::h851ab94c8b8c683e [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:48:5 [INFO] [stderr] 28: 0x56092c7fadec - main [INFO] [stderr] 29: 0x7f26fb5360b3 - __libc_start_main [INFO] [stderr] 30: 0x56092c7f906e - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "06620312bd8a9f9a8c27a20dad6793505caaa126399a47d2053f526296966d24", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "06620312bd8a9f9a8c27a20dad6793505caaa126399a47d2053f526296966d24", kill_on_drop: false }` [INFO] [stdout] 06620312bd8a9f9a8c27a20dad6793505caaa126399a47d2053f526296966d24