[INFO] fetching crate chemfiles 0.10.0... [INFO] testing chemfiles-0.10.0 against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530 [INFO] extracting crate chemfiles 0.10.0 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate chemfiles 0.10.0 on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate chemfiles 0.10.0 [INFO] finished tweaking crates.io crate chemfiles 0.10.0 [INFO] tweaked toml for crates.io crate chemfiles 0.10.0 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate crates.io crate chemfiles 0.10.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ad4009b24451c3711e6920ac3dca3b10fb143aec3fc19f8ddb067a285a822da0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ad4009b24451c3711e6920ac3dca3b10fb143aec3fc19f8ddb067a285a822da0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ad4009b24451c3711e6920ac3dca3b10fb143aec3fc19f8ddb067a285a822da0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ad4009b24451c3711e6920ac3dca3b10fb143aec3fc19f8ddb067a285a822da0", kill_on_drop: false }` [INFO] [stdout] ad4009b24451c3711e6920ac3dca3b10fb143aec3fc19f8ddb067a285a822da0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e70b71b3a2e666bedecd36b708aa9307223a80c59e3c633a95af8bd13d24b35a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e70b71b3a2e666bedecd36b708aa9307223a80c59e3c633a95af8bd13d24b35a", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling libc v0.2.82 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling chemfiles-sys v0.10.0 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-070e5807101e6911/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/." "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-14e2768ba2fe62de/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking bzip2 sources [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking pugixml sources [INFO] [stderr] -- Unpacking xdrfile sources [INFO] [stderr] -- Unpacking gemmi sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-14e2768ba2fe62de/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" [INFO] [stderr] Scanning dependencies of target xdrfile [INFO] [stderr] Scanning dependencies of target pugixml [INFO] [stderr] Scanning dependencies of target bzip2 [INFO] [stderr] [ 1%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile.c.o [INFO] [stderr] Scanning dependencies of target zlib [INFO] [stderr] [ 2%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_xtc.c.o [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] [ 2%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_trr.c.o [INFO] [stderr] [ 2%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] [ 2%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/huffman.c.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/crc32.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/randtable.c.o [INFO] [stderr] [ 4%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/crctable.c.o [INFO] [stderr] [ 4%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/decompress.c.o [INFO] [stderr] Scanning dependencies of target lzma [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] [ 5%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/compress.c.o [INFO] [stderr] [ 6%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] [ 7%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/bzlib.c.o [INFO] [stderr] [ 7%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/deflate.c.o [INFO] [stderr] [ 7%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o [INFO] [stderr] [ 9%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzlib.c.o [INFO] [stderr] [ 9%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzclose.c.o [INFO] [stderr] [ 9%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/lammpsplugin.c.o [INFO] [stderr] [ 9%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzwrite.c.o [INFO] [stderr] [ 10%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/os.cc.o [INFO] [stderr] [ 11%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/infback.c.o [INFO] [stderr] [ 12%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/liblib/nc_initialize.c.o [INFO] [stderr] [ 13%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inflate.c.o [INFO] [stderr] [ 11%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzread.c.o [INFO] [stderr] [ 13%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inftrees.c.o [INFO] [stderr] [ 11%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o [INFO] [stderr] [ 13%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inffast.c.o [INFO] [stderr] [ 14%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/trees.c.o [INFO] [stderr] [ 15%] Building 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Built target netcdf [INFO] [stderr] [ 84%] Built target lzma [INFO] [stderr] [ 84%] Built target tng_io [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning (dev) in CMakeLists.txt: [INFO] [stderr] No project() command is present. The top-level CMakeLists.txt file must [INFO] [stderr] contain a literal, direct call to the project() command. Add a line of [INFO] [stderr] code such as [INFO] [stderr] [INFO] [stderr] project(ProjectName) [INFO] [stderr] [INFO] [stderr] near the top of the file, but after cmake_minimum_required(). [INFO] [stderr] [INFO] [stderr] CMake is pretending there is a "project(Project)" command on the first [INFO] [stderr] line. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at chemfiles/CMakeLists.txt:33 (option): [INFO] [stderr] Policy CMP0077 is not set: option() honors normal variables. Run "cmake [INFO] [stderr] --help-policy CMP0077" for policy details. Use the cmake_policy command to [INFO] [stderr] set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:206: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:232: chemfiles/CMakeFiles/chemfiles_objects.dir/src/UnitCell.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/external/fmt/CMakeFiles/fmt.dir/build.make:63: chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:467: chemfiles/external/fmt/CMakeFiles/fmt.dir/all] Error 2 [INFO] [stderr] make[1]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:102: chemfiles/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/external/CMakeFiles/pugixml.dir/build.make:63: chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:359: chemfiles/external/CMakeFiles/pugixml.dir/all] Error 2 [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/property.cpp:11: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/cell.cpp:9: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/misc.cpp:14: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/misc.cpp: In function 'chfl_status chfl_formats_list(chfl_format_metadata**, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/misc.cpp:69:54: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 69 | *count = static_cast(formats.size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/residue.cpp:10: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:180: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:115: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:63: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:89: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o] Error 1 [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/selection.cpp:11: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/frame.cpp:9: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/trajectory.cpp:10: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_atoms_count(const CHFL_RESIDUE*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/residue.cpp:90:55: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 90 | *count = static_cast(residue->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_atoms(const CHFL_RESIDUE*, uint64_t*, uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/residue.cpp:105:51: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 105 | atoms[i] = static_cast(index); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_properties_count(const CHFL_RESIDUE*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/residue.cpp:151:68: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 151 | *count = static_cast(residue->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/atom.cpp:10: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:284: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/misc.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:310: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/residue.cpp.o] Error 1 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:297: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/property.cpp.o] Error 1 [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:9: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/atom.cpp: In function 'chfl_status chfl_atom_properties_count(const CHFL_ATOM*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/atom.cpp:191:65: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 191 | *count = static_cast(atom->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:128: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:323: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/selection.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/frame.cpp: In function 'chfl_status chfl_frame_atoms_count(const CHFL_FRAME*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/frame.cpp:51:53: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 51 | *count = static_cast(frame->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:193: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o] Error 1 [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/frame.cpp: In function 'chfl_status chfl_frame_properties_count(const CHFL_FRAME*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/frame.cpp:214:66: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 214 | *count = static_cast(frame->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_atoms_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:58:56: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 58 | *count = static_cast(topology->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_bonds_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:88:64: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 88 | *count = static_cast(topology->bonds().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_angles_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:96:65: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 96 | *count = static_cast(topology->angles().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_dihedrals_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:104:68: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 104 | *count = static_cast(topology->dihedrals().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_impropers_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:112:68: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 112 | *count = static_cast(topology->impropers().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_bonds(const CHFL_TOPOLOGY*, uint64_t (*)[2], uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:128:59: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 128 | data[i][0] = static_cast(bonds[i][0]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:129:59: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 129 | data[i][1] = static_cast(bonds[i][1]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_angles(const CHFL_TOPOLOGY*, uint64_t (*)[3], uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:146:60: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 146 | data[i][0] = static_cast(angles[i][0]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:147:60: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 147 | data[i][1] = static_cast(angles[i][1]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:148:60: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 148 | data[i][2] = static_cast(angles[i][2]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_dihedrals(const CHFL_TOPOLOGY*, uint64_t (*)[4], uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:165:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 165 | data[i][0] = static_cast(dihedrals[i][0]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:166:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 166 | data[i][1] = static_cast(dihedrals[i][1]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:167:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 167 | data[i][2] = static_cast(dihedrals[i][2]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:168:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 168 | data[i][3] = static_cast(dihedrals[i][3]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_impropers(const CHFL_TOPOLOGY*, uint64_t (*)[4], uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:185:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 185 | data[i][0] = static_cast(impropers[i][0]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:186:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 186 | data[i][1] = static_cast(impropers[i][1]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:187:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 187 | data[i][2] = static_cast(impropers[i][2]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:188:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 188 | data[i][3] = static_cast(impropers[i][3]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_residues_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/capi/topology.cpp:218:67: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 218 | *count = static_cast(topology->residues().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/files/Bz2File.cpp: In member function 'virtual void chemfiles::Bz2File::seek(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/chemfiles/src/files/Bz2File.cpp:146:65: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 146 | auto count = this->read(buffer, static_cast(position)); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:76: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:219: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:332: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5592edf0eae0 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5592edf0eae0 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5592edf0eae0 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5592edf0eae0 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5592edf2e92c - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x5592edf0b785 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x5592edf1112b - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5592edf1112b - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5592edf1112b - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5592edf10c01 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5592edf117d1 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x5592edf112d7 - std::panicking::begin_panic_handler::{{closure}}::h95197ccd88846f7a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x5592edf0efbc - std::sys_common::backtrace::__rust_end_short_backtrace::h7641df9566f7b7d0 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5592edf11239 - rust_begin_unwind [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x5592ede8fbeb - std::panicking::begin_panic_fmt::hdc39c0cc0031e534 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:457:5 [INFO] [stderr] 15: 0x5592ede9a2f3 - cmake::fail::h07bf6a3e05f5878a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] 16: 0x5592ede99d01 - cmake::run::h74128779a5e6df79 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9 [INFO] [stderr] 17: 0x5592ede97731 - cmake::Config::build::hb3bb2d1b222b0934 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:778:9 [INFO] [stderr] 18: 0x5592ede90d4b - build_script_build::build_chemfiles::hc29e21e18ac6a79c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/build.rs:18:19 [INFO] [stderr] 19: 0x5592ede90b5e - build_script_build::main::h2e25813280187c15 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/build.rs:8:19 [INFO] [stderr] 20: 0x5592ede91aeb - core::ops::function::FnOnce::call_once::h930f7c129bae5c8f [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 21: 0x5592ede9197e - std::sys_common::backtrace::__rust_begin_short_backtrace::h7d504727efcbad89 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 22: 0x5592ede92731 - std::rt::lang_start::{{closure}}::hdc48633605bba514 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:49:18 [INFO] [stderr] 23: 0x5592edf11cc9 - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 24: 0x5592edf11cc9 - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 25: 0x5592edf11cc9 - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 26: 0x5592edf11cc9 - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:433:14 [INFO] [stderr] 27: 0x5592edf11cc9 - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:34:21 [INFO] [stderr] 28: 0x5592ede92710 - std::rt::lang_start::h7771d7b1c3283651 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:48:5 [INFO] [stderr] 29: 0x5592ede915ec - main [INFO] [stderr] 30: 0x7f72e7edb0b3 - __libc_start_main [INFO] [stderr] 31: 0x5592ede90a8e - _start [INFO] [stderr] 32: 0x0 - [INFO] running `Command { std: "docker" "inspect" "e70b71b3a2e666bedecd36b708aa9307223a80c59e3c633a95af8bd13d24b35a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e70b71b3a2e666bedecd36b708aa9307223a80c59e3c633a95af8bd13d24b35a", kill_on_drop: false }` [INFO] [stdout] e70b71b3a2e666bedecd36b708aa9307223a80c59e3c633a95af8bd13d24b35a