[INFO] fetching crate bio-types 0.11.0... [INFO] testing bio-types-0.11.0 against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530 [INFO] extracting crate bio-types 0.11.0 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate bio-types 0.11.0 on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate bio-types 0.11.0 [INFO] finished tweaking crates.io crate bio-types 0.11.0 [INFO] tweaked toml for crates.io crate bio-types 0.11.0 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 1205d4ee2322aea1ca837110b98b644363856fb871c1bf74355defe5ace6b02f [INFO] running `Command { std: "docker" "start" "-a" "1205d4ee2322aea1ca837110b98b644363856fb871c1bf74355defe5ace6b02f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1205d4ee2322aea1ca837110b98b644363856fb871c1bf74355defe5ace6b02f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1205d4ee2322aea1ca837110b98b644363856fb871c1bf74355defe5ace6b02f", kill_on_drop: false }` [INFO] [stdout] 1205d4ee2322aea1ca837110b98b644363856fb871c1bf74355defe5ace6b02f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8eda2d820bc2ed2b4e308b8f9d3a78aa04a679cd6f2aa8e78a8181fc07c5d4e3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8eda2d820bc2ed2b4e308b8f9d3a78aa04a679cd6f2aa8e78a8181fc07c5d4e3", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling syn v1.0.72 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling thiserror-impl v1.0.25 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling thiserror v1.0.25 [INFO] [stderr] Compiling bio-types v0.11.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 13.14s [INFO] running `Command { std: "docker" "inspect" "8eda2d820bc2ed2b4e308b8f9d3a78aa04a679cd6f2aa8e78a8181fc07c5d4e3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8eda2d820bc2ed2b4e308b8f9d3a78aa04a679cd6f2aa8e78a8181fc07c5d4e3", kill_on_drop: false }` [INFO] [stdout] 8eda2d820bc2ed2b4e308b8f9d3a78aa04a679cd6f2aa8e78a8181fc07c5d4e3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ae75559294c3469bfcf2495dde4d857e70bafc714467ee00675f0bb8cb0dfb27 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ae75559294c3469bfcf2495dde4d857e70bafc714467ee00675f0bb8cb0dfb27", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Compiling bio-types v0.11.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.14s [INFO] running `Command { std: "docker" "inspect" "ae75559294c3469bfcf2495dde4d857e70bafc714467ee00675f0bb8cb0dfb27", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ae75559294c3469bfcf2495dde4d857e70bafc714467ee00675f0bb8cb0dfb27", kill_on_drop: false }` [INFO] [stdout] ae75559294c3469bfcf2495dde4d857e70bafc714467ee00675f0bb8cb0dfb27 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 109be370a590da2eefe554bbd0d3894328da12598232b7a03ccf409350667b1e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "109be370a590da2eefe554bbd0d3894328da12598232b7a03ccf409350667b1e", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/bio_types-662dd0eb197386f7) [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test alignment::tests::test_path ... ok [INFO] [stdout] test alignment::tests::test_cigar ... ok [INFO] [stdout] test annot::pos::tests::loc_impl ... ok [INFO] [stdout] test annot::pos::tests::pos_accessors ... ok [INFO] [stdout] test strand::tests::test_req_strand ... ok [INFO] [stdout] test annot::pos::tests::string_representation ... ok [INFO] [stdout] test strand::tests::test_strand ... ok [INFO] [stdout] test alignment::tests::test_pretty ... ok [INFO] [stdout] test annot::spliced::tests::into_outof ... ok [INFO] [stdout] test annot::pos::tests::strand_conversion ... ok [INFO] [stdout] test annot::contig::tests::intersection ... ok [INFO] [stdout] test annot::spliced::tests::intersection ... ok [INFO] [stdout] test annot::contig::tests::into_outof ... ok [INFO] [stdout] test annot::spliced::tests::length_start_to_contig ... ok [INFO] [stdout] test annot::contig::tests::first_and_last ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stderr] Doc-tests bio-types [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::new (line 55) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::new (line 57) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_upstream (line 150) ... ok [INFO] [stdout] test src/strand.rs - strand::ReqStrand::on_strand (line 175) ... ok [INFO] [stdout] test src/sequence.rs - sequence::SequenceReadPairOrientation (line 39) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::sub_assign (line 127) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::with_first_length (line 82) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::add_assign (line 96) ... ok [INFO] [stdout] test src/alignment.rs - alignment::Alignment::path (line 332) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig (line 32) ... ok [INFO] [stdout] test src/annot/mod.rs - annot (line 30) ... ok [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced (line 208) ... ok [INFO] [stdout] test src/alignment.rs - alignment::Alignment::cigar (line 95) ... ok [INFO] [stdout] test src/annot/refids.rs - annot::refids::RefIDSet (line 14) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos (line 31) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_downstream (line 177) ... ok [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced::new (line 238) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.45s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "109be370a590da2eefe554bbd0d3894328da12598232b7a03ccf409350667b1e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "109be370a590da2eefe554bbd0d3894328da12598232b7a03ccf409350667b1e", kill_on_drop: false }` [INFO] [stdout] 109be370a590da2eefe554bbd0d3894328da12598232b7a03ccf409350667b1e