[INFO] fetching crate bam-builder 0.1.3... [INFO] testing bam-builder-0.1.3 against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530 [INFO] extracting crate bam-builder 0.1.3 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate bam-builder 0.1.3 on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate bam-builder 0.1.3 [INFO] finished tweaking crates.io crate bam-builder 0.1.3 [INFO] tweaked toml for crates.io crate bam-builder 0.1.3 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate crates.io crate bam-builder 0.1.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 670e624e54752ead8940353dc2ae087c8251b026560da74327cc7db79538bd7d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "670e624e54752ead8940353dc2ae087c8251b026560da74327cc7db79538bd7d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "670e624e54752ead8940353dc2ae087c8251b026560da74327cc7db79538bd7d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "670e624e54752ead8940353dc2ae087c8251b026560da74327cc7db79538bd7d", kill_on_drop: false }` [INFO] [stdout] 670e624e54752ead8940353dc2ae087c8251b026560da74327cc7db79538bd7d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4bc0b6498aa002ea7010c692ce0d00c3060f9c38600d85345eac7675c8b84521 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "4bc0b6498aa002ea7010c692ce0d00c3060f9c38600d85345eac7675c8b84521", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.82 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.58 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling getrandom v0.2.1 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling tinyvec_macros v0.1.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling strsim v0.9.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling derive_builder v0.9.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling tinyvec v1.1.0 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling thread_local v1.1.0 [INFO] [stderr] Compiling form_urlencoded v1.0.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling unicode-normalization v0.1.16 [INFO] [stderr] Compiling rand_core v0.6.1 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand_chacha v0.3.0 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rand v0.8.2 [INFO] [stderr] Compiling openssl-src v111.13.0+1.1.1i [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling openssl-sys v0.9.60 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling curl-sys v0.4.39+curl-7.74.0 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling url v2.2.0 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling darling_core v0.10.2 [INFO] [stderr] Compiling darling_macro v0.10.2 [INFO] [stderr] Compiling thiserror-impl v1.0.23 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling darling v0.10.2 [INFO] [stderr] Compiling derive_builder_core v0.9.0 [INFO] [stderr] Compiling thiserror v1.0.23 [INFO] [stderr] Compiling bio-types v0.10.0 [INFO] [stderr] Compiling rust-htslib v0.35.2 [INFO] [stderr] Compiling bam-builder v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 41s [INFO] running `Command { std: "docker" "inspect" "4bc0b6498aa002ea7010c692ce0d00c3060f9c38600d85345eac7675c8b84521", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4bc0b6498aa002ea7010c692ce0d00c3060f9c38600d85345eac7675c8b84521", kill_on_drop: false }` [INFO] [stdout] 4bc0b6498aa002ea7010c692ce0d00c3060f9c38600d85345eac7675c8b84521 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bd0f324639fa45cadfd4a39d8a7a337ed212cb6decbbe60bc091e140fb3b3dd5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "bd0f324639fa45cadfd4a39d8a7a337ed212cb6decbbe60bc091e140fb3b3dd5", kill_on_drop: false }` [INFO] [stderr] Compiling bam-builder v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.08s [INFO] running `Command { std: "docker" "inspect" "bd0f324639fa45cadfd4a39d8a7a337ed212cb6decbbe60bc091e140fb3b3dd5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bd0f324639fa45cadfd4a39d8a7a337ed212cb6decbbe60bc091e140fb3b3dd5", kill_on_drop: false }` [INFO] [stdout] bd0f324639fa45cadfd4a39d8a7a337ed212cb6decbbe60bc091e140fb3b3dd5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] f6bdcde95fe8f25f43d7a7f403424b98de1c55077becf0e5724357389f341c0d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f6bdcde95fe8f25f43d7a7f403424b98de1c55077becf0e5724357389f341c0d", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/bam_builder-6c830d50d4fcc3e8) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test tests::check_proper_pairs ... ok [INFO] [stdout] test tests::check_improper_pair ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests bam-builder [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test src/lib.rs - BamBuilder::new (line 111) ... ok [INFO] [stdout] test src/sequence_dict.rs - sequence_dict::SequenceDict (line 11) ... ok [INFO] [stdout] test src/lib.rs - (line 13) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 4.35s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "f6bdcde95fe8f25f43d7a7f403424b98de1c55077becf0e5724357389f341c0d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f6bdcde95fe8f25f43d7a7f403424b98de1c55077becf0e5724357389f341c0d", kill_on_drop: false }` [INFO] [stdout] f6bdcde95fe8f25f43d7a7f403424b98de1c55077becf0e5724357389f341c0d