[INFO] cloning repository https://github.com/zaeleus/noodles-count-features [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a9df8a62f358dd013d4381e830484a168a092f89 [INFO] testing zaeleus/noodles-count-features against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-14/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-14/source/Cargo.toml [INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] ce2f1ee3f539db0486b7bdd47119daa77d333fe0ffde1c09ad613f66095679ad [INFO] running `Command { std: "docker" "start" "-a" "ce2f1ee3f539db0486b7bdd47119daa77d333fe0ffde1c09ad613f66095679ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ce2f1ee3f539db0486b7bdd47119daa77d333fe0ffde1c09ad613f66095679ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ce2f1ee3f539db0486b7bdd47119daa77d333fe0ffde1c09ad613f66095679ad", kill_on_drop: false }` [INFO] [stdout] ce2f1ee3f539db0486b7bdd47119daa77d333fe0ffde1c09ad613f66095679ad [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cb8a6b9fa2878f11ea6f158ac05b7d9d145503b2d2428cb921f3581411f4f739 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cb8a6b9fa2878f11ea6f158ac05b7d9d145503b2d2428cb921f3581411f4f739", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling libc v0.2.90 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling syn v1.0.64 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling hashbrown v0.9.1 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling pin-project-lite v0.2.6 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling anyhow v1.0.39 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725) [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling regex v1.4.5 [INFO] [stderr] Compiling thread_local v1.1.3 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling tracing-core v0.1.17 [INFO] [stderr] Compiling sharded-slab v0.1.1 [INFO] [stderr] Compiling noodles-gff v0.1.0 (https://github.com/zaeleus/noodles.git?rev=bd7c390468bfe5957c15002cb55ce82216ee4336#bd7c3904) [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling indexmap v1.6.2 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling tokio v1.4.0 [INFO] [stderr] Compiling tracing-log v0.1.2 [INFO] [stderr] Compiling tracing-serde v0.1.2 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling matchers v0.0.1 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling noodles-bgzf v0.1.0 (https://github.com/zaeleus/noodles.git?rev=bd7c390468bfe5957c15002cb55ce82216ee4336#bd7c3904) [INFO] [stderr] Compiling noodles-sam v0.1.0 (https://github.com/zaeleus/noodles.git?rev=bd7c390468bfe5957c15002cb55ce82216ee4336#bd7c3904) [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling noodles-core v0.1.0 (https://github.com/zaeleus/noodles.git?rev=bd7c390468bfe5957c15002cb55ce82216ee4336#bd7c3904) [INFO] [stderr] Compiling noodles-bam v0.1.0 (https://github.com/zaeleus/noodles.git?rev=bd7c390468bfe5957c15002cb55ce82216ee4336#bd7c3904) [INFO] [stderr] Compiling noodles v0.1.0 (https://github.com/zaeleus/noodles.git?rev=bd7c390468bfe5957c15002cb55ce82216ee4336#bd7c3904) [INFO] [stderr] Compiling tracing-attributes v0.1.15 [INFO] [stderr] Compiling git-testament-derive v0.1.10 [INFO] [stderr] Compiling git-testament v0.1.9 [INFO] [stderr] Compiling tracing v0.1.25 [INFO] [stderr] Compiling tracing-subscriber v0.2.17 [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 39s [INFO] running `Command { std: "docker" "inspect" "cb8a6b9fa2878f11ea6f158ac05b7d9d145503b2d2428cb921f3581411f4f739", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cb8a6b9fa2878f11ea6f158ac05b7d9d145503b2d2428cb921f3581411f4f739", kill_on_drop: false }` [INFO] [stdout] cb8a6b9fa2878f11ea6f158ac05b7d9d145503b2d2428cb921f3581411f4f739 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 23ead3555794e5224e4da1d6c3aba2a64edc1333e13b22a6d4886bf83e72d2de [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "23ead3555794e5224e4da1d6c3aba2a64edc1333e13b22a6d4886bf83e72d2de", kill_on_drop: false }` [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 9.42s [INFO] running `Command { std: "docker" "inspect" "23ead3555794e5224e4da1d6c3aba2a64edc1333e13b22a6d4886bf83e72d2de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "23ead3555794e5224e4da1d6c3aba2a64edc1333e13b22a6d4886bf83e72d2de", kill_on_drop: false }` [INFO] [stdout] 23ead3555794e5224e4da1d6c3aba2a64edc1333e13b22a6d4886bf83e72d2de [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 3ab803fc9f3af7d00d5c698eaf29e799d996d4543f907985661a83b0d845afb5 [INFO] running `Command { std: "docker" "start" "-a" "3ab803fc9f3af7d00d5c698eaf29e799d996d4543f907985661a83b0d845afb5", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-55c189de77ae5922) [INFO] [stdout] [INFO] [stdout] running 27 tests [INFO] [stdout] test commands::tests::test_from_str ... ok [INFO] [stdout] test count::context::tests::test_add ... ok [INFO] [stdout] test count::tests::test_get_reference ... ok [INFO] [stdout] test count::writer::tests::test_write_stats ... ok [INFO] [stdout] test feature::tests::test_is_empty ... ok [INFO] [stdout] test count::writer::tests::test_write_counts ... ok [INFO] [stdout] test feature::tests::test_len ... ok [INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok [INFO] [stdout] test feature::tests::test_start ... ok [INFO] [stdout] test feature::tests::test_strand ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test count::reader::tests::test_read_counts ... ok [INFO] [stdout] test count::context::tests::test_add_event ... ok [INFO] [stdout] test feature::tests::test_end ... ok [INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok [INFO] [stdout] test match_intervals::tests::test_next ... ok [INFO] [stdout] test record_pairs::tests::test_mate_key ... ok [INFO] [stdout] test record_pairs::tests::test_key ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_mate ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_try_from_flag ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok [INFO] [stdout] test tests::test_read_features ... ok [INFO] [stdout] test normalization::method::tests::test_from_str ... ok [INFO] [stdout] test normalization::tests::test_merge_features ... ok [INFO] [stdout] test normalization::writer::tests::test_write_values ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-b4c07029acb10e7b) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/quantify_single_end_forward_test.rs (/opt/rustwide/target/debug/deps/quantify_single_end_forward_test-07645501848403e4) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stderr] Doc-tests noodles-squab [INFO] [stdout] test test_quantify_with_single_end_forward_sample ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "3ab803fc9f3af7d00d5c698eaf29e799d996d4543f907985661a83b0d845afb5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3ab803fc9f3af7d00d5c698eaf29e799d996d4543f907985661a83b0d845afb5", kill_on_drop: false }` [INFO] [stdout] 3ab803fc9f3af7d00d5c698eaf29e799d996d4543f907985661a83b0d845afb5