[INFO] cloning repository https://github.com/sstadick/rumi
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sstadick/rumi" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 34a92eb41857a1a1c4c096f516a0271ed57d16f4
[INFO] testing sstadick/rumi against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi" "/workspace/builds/worker-11/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/sstadick/rumi on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/sstadick/rumi
[INFO] finished tweaking git repo https://github.com/sstadick/rumi
[INFO] tweaked toml for git repo https://github.com/sstadick/rumi written to /workspace/builds/worker-11/source/Cargo.toml
[INFO] crate git repo https://github.com/sstadick/rumi already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 10244d6ef526707953d0a341b85f17971053e98e8bfbea03bd4e5ce5323a6925
[INFO] running `Command { std: "docker" "start" "-a" "10244d6ef526707953d0a341b85f17971053e98e8bfbea03bd4e5ce5323a6925", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "10244d6ef526707953d0a341b85f17971053e98e8bfbea03bd4e5ce5323a6925", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "10244d6ef526707953d0a341b85f17971053e98e8bfbea03bd4e5ce5323a6925", kill_on_drop: false }`
[INFO] [stdout] 10244d6ef526707953d0a341b85f17971053e98e8bfbea03bd4e5ce5323a6925
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 488252e3e07f1e4b697cd4a1a3dea5cce45f385abbf223d32336c5681efa0087
[INFO] running `Command { std: "docker" "start" "-a" "488252e3e07f1e4b697cd4a1a3dea5cce45f385abbf223d32336c5681efa0087", kill_on_drop: false }`
[INFO] [stderr]    Compiling cfg-if v0.1.9
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling quick-error v1.2.2
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling log v0.4.7
[INFO] [stderr]    Compiling byteorder v1.3.2
[INFO] [stderr]    Compiling regex-syntax v0.6.12
[INFO] [stderr]    Compiling proc-macro2 v1.0.6
[INFO] [stderr]    Compiling syn v0.15.39
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling nodrop v0.1.13
[INFO] [stderr]    Compiling bindgen v0.51.1
[INFO] [stderr]    Compiling termcolor v1.0.5
[INFO] [stderr]    Compiling scopeguard v1.0.0
[INFO] [stderr]    Compiling doc-comment v0.3.1
[INFO] [stderr]    Compiling serde v1.0.97
[INFO] [stderr]    Compiling rayon-core v1.5.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling basebits v1.2.0
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling lzma-sys v0.1.14
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling itertools v0.8.0
[INFO] [stderr]    Compiling crossbeam-utils v0.6.6
[INFO] [stderr]    Compiling humantime v1.2.0
[INFO] [stderr]    Compiling fs-utils v1.1.1
[INFO] [stderr]    Compiling arrayvec v0.4.11
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling atty v0.2.13
[INFO] [stderr]    Compiling which v3.1.0
[INFO] [stderr]    Compiling num_cpus v1.10.1
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling crossbeam-queue v0.1.2
[INFO] [stderr]    Compiling url v2.1.0
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling clang-sys v0.28.0
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling rustc-hash v1.0.1
[INFO] [stderr]    Compiling memoffset v0.5.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling aho-corasick v0.7.6
[INFO] [stderr]    Compiling backtrace v0.3.40
[INFO] [stderr]    Compiling crossbeam-epoch v0.7.2
[INFO] [stderr]    Compiling crossbeam-deque v0.6.3
[INFO] [stderr]    Compiling cexpr v0.3.5
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling rayon v1.1.0
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling serde_derive v1.0.97
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling rust-htslib v0.26.0
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling rumi v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 51.17s
[INFO] running `Command { std: "docker" "inspect" "488252e3e07f1e4b697cd4a1a3dea5cce45f385abbf223d32336c5681efa0087", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "488252e3e07f1e4b697cd4a1a3dea5cce45f385abbf223d32336c5681efa0087", kill_on_drop: false }`
[INFO] [stdout] 488252e3e07f1e4b697cd4a1a3dea5cce45f385abbf223d32336c5681efa0087
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 89ec96ee5f3493f57e97f6ca2247c969fc36ae43917ac5f127bf36d530be08f6
[INFO] running `Command { std: "docker" "start" "-a" "89ec96ee5f3493f57e97f6ca2247c969fc36ae43917ac5f127bf36d530be08f6", kill_on_drop: false }`
[INFO] [stderr]    Compiling rumi v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.55s
[INFO] running `Command { std: "docker" "inspect" "89ec96ee5f3493f57e97f6ca2247c969fc36ae43917ac5f127bf36d530be08f6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "89ec96ee5f3493f57e97f6ca2247c969fc36ae43917ac5f127bf36d530be08f6", kill_on_drop: false }`
[INFO] [stdout] 89ec96ee5f3493f57e97f6ca2247c969fc36ae43917ac5f127bf36d530be08f6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 583878072c98788df59b9692ad20e7b8b4c87f594bb6bb24f195e3361d5c2f38
[INFO] running `Command { std: "docker" "start" "-a" "583878072c98788df59b9692ad20e7b8b4c87f594bb6bb24f195e3361d5c2f38", kill_on_drop: false }`
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stdout] running 7 tests
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/rumi_lib-d5808ac4abf97332)
[INFO] [stdout] test test::test_graph_small ... ok
[INFO] [stdout] test test::test_determine_umi ... ok
[INFO] [stdout] test test::test_group_reads_small ... ok
[INFO] [stdout] test test::test_read_groups_umi_tools ... ok
[INFO] [stdout] test test::test_group_reads_complex ... ok
[INFO] [stdout] test test::test_graph_umi ... ok
[INFO] [stdout] test test::test_read_groups_cigars ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/rumi-1ee2569e1349cdef)
[INFO] [stderr]    Doc-tests rumi_lib
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "583878072c98788df59b9692ad20e7b8b4c87f594bb6bb24f195e3361d5c2f38", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "583878072c98788df59b9692ad20e7b8b4c87f594bb6bb24f195e3361d5c2f38", kill_on_drop: false }`
[INFO] [stdout] 583878072c98788df59b9692ad20e7b8b4c87f594bb6bb24f195e3361d5c2f38