[INFO] cloning repository https://github.com/mooreryan/bio_ballyhoo
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mooreryan/bio_ballyhoo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4895a9c2f64f3443dbc032002a5d6a371a1062d0
[INFO] testing mooreryan/bio_ballyhoo against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo" "/workspace/builds/worker-14/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mooreryan/bio_ballyhoo on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] finished tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] tweaked toml for git repo https://github.com/mooreryan/bio_ballyhoo written to /workspace/builds/worker-14/source/Cargo.toml
[INFO] crate git repo https://github.com/mooreryan/bio_ballyhoo already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d112f04d3337b23648b52748b1604b770b63e96673141da8acd5133f939b5a08
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "d112f04d3337b23648b52748b1604b770b63e96673141da8acd5133f939b5a08", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d112f04d3337b23648b52748b1604b770b63e96673141da8acd5133f939b5a08", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d112f04d3337b23648b52748b1604b770b63e96673141da8acd5133f939b5a08", kill_on_drop: false }`
[INFO] [stdout] d112f04d3337b23648b52748b1604b770b63e96673141da8acd5133f939b5a08
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 231ea0bc63bbe6e17773a596498feb20ff1085ab3667ea6877f9d9d870e11e67
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "231ea0bc63bbe6e17773a596498feb20ff1085ab3667ea6877f9d9d870e11e67", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling unicode-segmentation v1.7.1
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling once_cell v1.5.2
[INFO] [stderr]    Compiling regex-syntax v0.6.22
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling byteorder v1.4.2
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling hashbrown v0.9.1
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling itoa v0.4.7
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling getrandom v0.2.2
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling number_prefix v0.3.0
[INFO] [stderr]    Compiling terminal_size v0.1.16
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling thread_local v1.1.3
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling indexmap v1.6.1
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.15
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling rand_core v0.6.2
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling rand_chacha v0.3.0
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling rand v0.8.3
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling regex v1.4.3
[INFO] [stderr]    Compiling console v0.14.0
[INFO] [stderr]    Compiling indicatif v0.15.0
[INFO] [stderr]    Compiling serde_derive v1.0.123
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling enum-map v0.6.4
[INFO] [stderr]    Compiling snafu v0.6.10
[INFO] [stderr]    Compiling bio-types v0.10.0
[INFO] [stderr]    Compiling serde v1.0.123
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.15
[INFO] [stderr]    Compiling multimap v0.8.2
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.5
[INFO] [stderr]    Compiling structopt v0.3.21
[INFO] [stderr]    Compiling make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]    Compiling derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stderr]    Compiling msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]    Compiling simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 59.74s
[INFO] running `Command { std: "docker" "inspect" "231ea0bc63bbe6e17773a596498feb20ff1085ab3667ea6877f9d9d870e11e67", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "231ea0bc63bbe6e17773a596498feb20ff1085ab3667ea6877f9d9d870e11e67", kill_on_drop: false }`
[INFO] [stdout] 231ea0bc63bbe6e17773a596498feb20ff1085ab3667ea6877f9d9d870e11e67
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 24f2ce44f031b9064c1efa28126ba764798ba02ed8cd420fe2826ade3091cfc5
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "24f2ce44f031b9064c1efa28126ba764798ba02ed8cd420fe2826ade3091cfc5", kill_on_drop: false }`
[INFO] [stderr]    Compiling make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]    Compiling simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]    Compiling msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]    Compiling derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.29s
[INFO] running `Command { std: "docker" "inspect" "24f2ce44f031b9064c1efa28126ba764798ba02ed8cd420fe2826ade3091cfc5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "24f2ce44f031b9064c1efa28126ba764798ba02ed8cd420fe2826ade3091cfc5", kill_on_drop: false }`
[INFO] [stdout] 24f2ce44f031b9064c1efa28126ba764798ba02ed8cd420fe2826ade3091cfc5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e72edb5e39843539e9d2ea16a4b6d37ccf32ba6acc9d2f5c1d7866d3d897169d
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "e72edb5e39843539e9d2ea16a4b6d37ccf32ba6acc9d2f5c1d7866d3d897169d", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.15s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/derep-8b01b133ad91cbaf)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/derep-5320f545b1d1ca9c)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/make_reads-ee71ffee86704999)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/make_reads-f1245b36275462a9)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/msa_pairwise-f16fb990fa5a4e04)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/msa_pairwise-42a82ab694073550)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/simple_headers-2b296c4cb742510e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests msa_pairwise
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests make_reads
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests derep
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e72edb5e39843539e9d2ea16a4b6d37ccf32ba6acc9d2f5c1d7866d3d897169d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e72edb5e39843539e9d2ea16a4b6d37ccf32ba6acc9d2f5c1d7866d3d897169d", kill_on_drop: false }`
[INFO] [stdout] e72edb5e39843539e9d2ea16a4b6d37ccf32ba6acc9d2f5c1d7866d3d897169d