[INFO] cloning repository https://github.com/chanzuckerberg/idseq-dedup [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chanzuckerberg/idseq-dedup" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a2720d7b3d46f6529b632bd823c802d19e7ef3dc [INFO] testing chanzuckerberg/idseq-dedup against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup" "/workspace/builds/worker-6/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/chanzuckerberg/idseq-dedup on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/chanzuckerberg/idseq-dedup [INFO] finished tweaking git repo https://github.com/chanzuckerberg/idseq-dedup [INFO] tweaked toml for git repo https://github.com/chanzuckerberg/idseq-dedup written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/chanzuckerberg/idseq-dedup already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8b34f86e1abe541dc5cde642b1137fbb9cda29de3ed55f8e5e9bcea63b3c2ed9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8b34f86e1abe541dc5cde642b1137fbb9cda29de3ed55f8e5e9bcea63b3c2ed9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8b34f86e1abe541dc5cde642b1137fbb9cda29de3ed55f8e5e9bcea63b3c2ed9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8b34f86e1abe541dc5cde642b1137fbb9cda29de3ed55f8e5e9bcea63b3c2ed9", kill_on_drop: false }` [INFO] [stdout] 8b34f86e1abe541dc5cde642b1137fbb9cda29de3ed55f8e5e9bcea63b3c2ed9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a81dcb3b3a323c70f51bf8f920b15d7367a85726e388f9bb07265ab64438f9d2 [INFO] running `Command { std: "docker" "start" "-a" "a81dcb3b3a323c70f51bf8f920b15d7367a85726e388f9bb07265ab64438f9d2", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.42 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling ppv-lite86 v0.2.9 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling hashbrown v0.9.1 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling simple-error v0.2.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling matrixmultiply v0.2.3 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.1.0 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling snafu-derive v0.6.9 [INFO] [stderr] Compiling enum-map-derive v0.4.3 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling enum-map v0.6.3 [INFO] [stderr] Compiling snafu v0.6.9 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.8.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling idseq-dedup v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 03s [INFO] running `Command { std: "docker" "inspect" "a81dcb3b3a323c70f51bf8f920b15d7367a85726e388f9bb07265ab64438f9d2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a81dcb3b3a323c70f51bf8f920b15d7367a85726e388f9bb07265ab64438f9d2", kill_on_drop: false }` [INFO] [stdout] a81dcb3b3a323c70f51bf8f920b15d7367a85726e388f9bb07265ab64438f9d2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7a63f8719b2af24f14f945d487267324c74a364e14415837c51a9cc88b18a3cb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7a63f8719b2af24f14f945d487267324c74a364e14415837c51a9cc88b18a3cb", kill_on_drop: false }` [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling idseq-dedup v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.79s [INFO] running `Command { std: "docker" "inspect" "7a63f8719b2af24f14f945d487267324c74a364e14415837c51a9cc88b18a3cb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7a63f8719b2af24f14f945d487267324c74a364e14415837c51a9cc88b18a3cb", kill_on_drop: false }` [INFO] [stdout] 7a63f8719b2af24f14f945d487267324c74a364e14415837c51a9cc88b18a3cb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c8980f58a1474e066a8a168aca25aeecc576e60178a3213b70a9222eb98000da [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c8980f58a1474e066a8a168aca25aeecc576e60178a3213b70a9222eb98000da", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/idseq_dedup-debdafa98a1606f8) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test clusters::test::test_insert_single ... ok [INFO] [stdout] test test::test_run_dedup_single ... ok [INFO] [stdout] test paired::test::test_r2_error ... ok [INFO] [stdout] test paired::test::test_r2_longer ... ok [INFO] [stdout] test test::test_run_dedup_paired_mismatched_files ... ok [INFO] [stdout] test paired::test::test_r1_longer ... ok [INFO] [stdout] test paired::test::test_r1_error ... ok [INFO] [stdout] test paired::test::test_different_ids ... ok [INFO] [stdout] test test::test_run_dedup_paired ... ok [INFO] [stdout] test clusters::test::test_write_cluster_sizes ... ok [INFO] [stdout] test clusters::test::test_insert_pair ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "c8980f58a1474e066a8a168aca25aeecc576e60178a3213b70a9222eb98000da", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c8980f58a1474e066a8a168aca25aeecc576e60178a3213b70a9222eb98000da", kill_on_drop: false }` [INFO] [stdout] c8980f58a1474e066a8a168aca25aeecc576e60178a3213b70a9222eb98000da