[INFO] cloning repository https://github.com/Mimerme/Mimerme [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Mimerme/Mimerme" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] df63a69dd00123b2eb2ab3520f84fe54a79a107d [INFO] testing Mimerme/Mimerme against master#99e3aef02079e9c10583638520cd0c134dc3a01d for pr-85530 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain 99e3aef02079e9c10583638520cd0c134dc3a01d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Mimerme/Mimerme [INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme [INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 04f5238116122eb50977d90f53971ba73522d0ba685a9ace176502c26a6b90d9 [INFO] running `Command { std: "docker" "start" "-a" "04f5238116122eb50977d90f53971ba73522d0ba685a9ace176502c26a6b90d9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "04f5238116122eb50977d90f53971ba73522d0ba685a9ace176502c26a6b90d9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "04f5238116122eb50977d90f53971ba73522d0ba685a9ace176502c26a6b90d9", kill_on_drop: false }` [INFO] [stdout] 04f5238116122eb50977d90f53971ba73522d0ba685a9ace176502c26a6b90d9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+99e3aef02079e9c10583638520cd0c134dc3a01d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e47b16b1a7403367f5427c16c8d3dc9edc467b6a73f535bd3178851400412906 [INFO] running `Command { std: "docker" "start" "-a" "e47b16b1a7403367f5427c16c8d3dc9edc467b6a73f535bd3178851400412906", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling serde v1.0.105 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling clang-sys v0.29.2 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling url v2.1.1 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling serde_derive v1.0.105 [INFO] [stderr] Compiling snafu-derive v0.6.3 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Compiling snafu v0.6.0 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling bincode v1.2.1 [INFO] [stderr] error: failed to run custom build command for `hts-sys v1.10.2` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-sys-5722d016efab5c9b/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#ifndef __APPLE__' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#endif' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o header.o header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION_TEXT "1.10.2"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o region.o region.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_libcurl.o hfile_libcurl.c [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hfile_libcurl.c:47:10: fatal error: curl/curl.h: No such file or directory [INFO] [stderr] 47 | #include [INFO] [stderr] | ^~~~~~~~~~~~~ [INFO] [stderr] compilation terminated. [INFO] [stderr] make: *** [Makefile:133: hfile_libcurl.o] Error 1 [INFO] [stderr] thread 'main' panicked at 'failed to build htslib', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86:9 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a422463e60 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55a422463e60 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55a422463e60 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55a422463e60 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55a42248a6cc - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x55a4224602b5 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x55a4224667fb - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55a4224667fb - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55a4224667fb - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55a4224662d1 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55a422466ea1 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55a422235083 - std::panicking::begin_panic::{{closure}}::h7eb97762a91089df [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x55a422241049 - std::sys_common::backtrace::__rust_end_short_backtrace::hee98291399d39a62 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55a422234fb9 - std::panicking::begin_panic::hbfee51d26ba073f8 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x55a421efd870 - build_script_build::main::h6c91aabbc15ac9c7 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86:9 [INFO] [stderr] 15: 0x55a421f028ab - core::ops::function::FnOnce::call_once::h48a038149885ba85 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 16: 0x55a421f02f8e - std::sys_common::backtrace::__rust_begin_short_backtrace::ha3c87137d301a859 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 17: 0x55a421f026d1 - std::rt::lang_start::{{closure}}::h529244220f36b48b [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:49:18 [INFO] [stderr] 18: 0x55a422467499 - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 19: 0x55a422467499 - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 20: 0x55a422467499 - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 21: 0x55a422467499 - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/panic.rs:433:14 [INFO] [stderr] 22: 0x55a422467499 - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:34:21 [INFO] [stderr] 23: 0x55a421f026b0 - std::rt::lang_start::h258b608f280fc86a [INFO] [stderr] at /rustc/99e3aef02079e9c10583638520cd0c134dc3a01d/library/std/src/rt.rs:48:5 [INFO] [stderr] 24: 0x55a421efe8dc - main [INFO] [stderr] 25: 0x7f7dec8ac0b3 - __libc_start_main [INFO] [stderr] 26: 0x55a421efc21e - _start [INFO] [stderr] 27: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "e47b16b1a7403367f5427c16c8d3dc9edc467b6a73f535bd3178851400412906", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e47b16b1a7403367f5427c16c8d3dc9edc467b6a73f535bd3178851400412906", kill_on_drop: false }` [INFO] [stdout] e47b16b1a7403367f5427c16c8d3dc9edc467b6a73f535bd3178851400412906