[INFO] fetching crate hdf5 0.7.1... [INFO] checking hdf5-0.7.1 against try#3bb2879ea9e58d65b875f9a98df44f4a43ce2597 for pr-85387 [INFO] extracting crate hdf5 0.7.1 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate hdf5 0.7.1 on toolchain 3bb2879ea9e58d65b875f9a98df44f4a43ce2597 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3bb2879ea9e58d65b875f9a98df44f4a43ce2597" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.7.1 [INFO] finished tweaking crates.io crate hdf5 0.7.1 [INFO] tweaked toml for crates.io crate hdf5 0.7.1 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.7.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3bb2879ea9e58d65b875f9a98df44f4a43ce2597" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded libloading v0.6.2 [INFO] [stderr] Downloaded ctor v0.1.15 [INFO] [stderr] Downloaded paste v1.0.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+3bb2879ea9e58d65b875f9a98df44f4a43ce2597" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 08e3412b0748c68274d4a56ae7a98fb00071c22a464125920c171300c7f92eac [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "08e3412b0748c68274d4a56ae7a98fb00071c22a464125920c171300c7f92eac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "08e3412b0748c68274d4a56ae7a98fb00071c22a464125920c171300c7f92eac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "08e3412b0748c68274d4a56ae7a98fb00071c22a464125920c171300c7f92eac", kill_on_drop: false }` [INFO] [stdout] 08e3412b0748c68274d4a56ae7a98fb00071c22a464125920c171300c7f92eac [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+3bb2879ea9e58d65b875f9a98df44f4a43ce2597" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c876076785233d2be630000fd41eacc4bee1fe3d038d4cbacf26c7daab5f7cfd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c876076785233d2be630000fd41eacc4bee1fe3d038d4cbacf26c7daab5f7cfd", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libloading v0.6.2 [INFO] [stderr] Compiling syn v1.0.38 [INFO] [stderr] Checking ppv-lite86 v0.2.8 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling hdf5 v0.7.1 (/opt/rustwide/workdir) [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Checking lock_api v0.4.2 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Checking getrandom v0.2.2 [INFO] [stderr] Checking hdf5-types v0.7.1 [INFO] [stderr] Checking parking_lot_core v0.8.2 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Checking rand_core v0.6.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-6e4c1784f9428a1c/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55b5fd2865c0 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55b5fd2865c0 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55b5fd2865c0 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55b5fd2865c0 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55b5fd2a532f - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x55b5fd283a55 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x55b5fd28864b - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55b5fd28864b - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55b5fd28864b - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55b5fd288121 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55b5fd288c60 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:625:17 [INFO] [stderr] 11: 0x55b5fd1d3cf3 - std::panicking::begin_panic::{{closure}}::hbfc31e26a768703a [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x55b5fd1e0ac9 - std::sys_common::backtrace::__rust_end_short_backtrace::h744acc3ec3720322 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55b5fd1d3c29 - std::panicking::begin_panic::h3f99bf83299b454b [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x55b5fd083de9 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h3fcc56e41d53532a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55b5fd0855fc - build_script_build::main::h32d9bb7a01216024 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55b5fd08912b - core::ops::function::FnOnce::call_once::h9f8ed4a770f6b418 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55b5fd091b3e - std::sys_common::backtrace::__rust_begin_short_backtrace::h30c50bef22da4151 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55b5fd08ae61 - std::rt::lang_start::{{closure}}::h391ae7e18378ecd4 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/rt.rs:49:18 [INFO] [stderr] 19: 0x55b5fd28909a - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55b5fd28909a - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x55b5fd28909a - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x55b5fd28909a - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panic.rs:433:14 [INFO] [stderr] 23: 0x55b5fd28909a - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/rt.rs:34:21 [INFO] [stderr] 24: 0x55b5fd08ae40 - std::rt::lang_start::h864101fa2c0b3109 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/rt.rs:48:5 [INFO] [stderr] 25: 0x55b5fd086afc - main [INFO] [stderr] 26: 0x7f1d930f50b3 - __libc_start_main [INFO] [stderr] 27: 0x55b5fd07eeae - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "c876076785233d2be630000fd41eacc4bee1fe3d038d4cbacf26c7daab5f7cfd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c876076785233d2be630000fd41eacc4bee1fe3d038d4cbacf26c7daab5f7cfd", kill_on_drop: false }` [INFO] [stdout] c876076785233d2be630000fd41eacc4bee1fe3d038d4cbacf26c7daab5f7cfd