[INFO] cloning repository https://github.com/Tehforsch/rbob [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Tehforsch/rbob" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTehforsch%2Frbob", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTehforsch%2Frbob'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] b74fc18727f400311b44fbe1861a4534a94d0cc1 [INFO] checking Tehforsch/rbob against try#3bb2879ea9e58d65b875f9a98df44f4a43ce2597 for pr-85387 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTehforsch%2Frbob" "/workspace/builds/worker-6/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Tehforsch/rbob on toolchain 3bb2879ea9e58d65b875f9a98df44f4a43ce2597 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3bb2879ea9e58d65b875f9a98df44f4a43ce2597" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Tehforsch/rbob [INFO] finished tweaking git repo https://github.com/Tehforsch/rbob [INFO] tweaked toml for git repo https://github.com/Tehforsch/rbob written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/Tehforsch/rbob already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3bb2879ea9e58d65b875f9a98df44f4a43ce2597" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/aldanor/hdf5-rust` [INFO] [stderr] Updating git submodule `https://github.com/HDFGroup/hdf5.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded winreg v0.8.0 [INFO] [stderr] Downloaded uom v0.30.0 [INFO] [stderr] Downloaded ordered-float v2.5.0 [INFO] [stderr] Downloaded kdtree v0.6.0 [INFO] [stderr] Downloaded ndarray-stats v0.5.0 [INFO] [stderr] Downloaded ndarray v0.15.2 [INFO] [stderr] Downloaded noisy_float v0.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+3bb2879ea9e58d65b875f9a98df44f4a43ce2597" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 9465194bfeb23a672cffc1998e2c1e3abe9acdd6052db59a6ae639684047de84 [INFO] running `Command { std: "docker" "start" "-a" "9465194bfeb23a672cffc1998e2c1e3abe9acdd6052db59a6ae639684047de84", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9465194bfeb23a672cffc1998e2c1e3abe9acdd6052db59a6ae639684047de84", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9465194bfeb23a672cffc1998e2c1e3abe9acdd6052db59a6ae639684047de84", kill_on_drop: false }` [INFO] [stdout] 9465194bfeb23a672cffc1998e2c1e3abe9acdd6052db59a6ae639684047de84 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+3bb2879ea9e58d65b875f9a98df44f4a43ce2597" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 291dec262738bf54dbc99ff119ec76792119e137144d3367975cc4b610b23e6d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "291dec262738bf54dbc99ff119ec76792119e137144d3367975cc4b610b23e6d", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.72 [INFO] [stderr] Compiling serde v1.0.126 [INFO] [stderr] Compiling hdf5-types v0.7.1 (https://github.com/aldanor/hdf5-rust?rev=ae86d5f7841d1ccb4791670c32df8e97b146ad72#ae86d5f7) [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling camino v1.0.4 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Compiling hdf5 v0.7.1 (https://github.com/aldanor/hdf5-rust?rev=ae86d5f7841d1ccb4791670c32df8e97b146ad72#ae86d5f7) [INFO] [stderr] Checking os_str_bytes v2.4.0 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Checking xdg v2.2.0 [INFO] [stderr] Checking strfmt v0.1.6 [INFO] [stderr] Checking pathdiff v0.2.0 [INFO] [stderr] Checking dissimilar v1.0.2 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.6.2 [INFO] [stderr] Checking matrixmultiply v0.3.1 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Checking itertools v0.10.0 [INFO] [stderr] Checking walkdir v2.3.2 [INFO] [stderr] Checking getrandom v0.2.3 [INFO] [stderr] Checking dirs-sys-next v0.1.2 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Checking textwrap v0.12.1 [INFO] [stderr] Checking dirs-next v2.0.0 [INFO] [stderr] Checking shellexpand v2.1.0 [INFO] [stderr] Checking rand_core v0.6.2 [INFO] [stderr] Compiling hdf5-sys v0.7.1 (https://github.com/aldanor/hdf5-rust?rev=ae86d5f7841d1ccb4791670c32df8e97b146ad72#ae86d5f7) [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking num-complex v0.4.0 [INFO] [stderr] Checking noisy_float v0.2.0 [INFO] [stderr] Checking kdtree v0.6.0 [INFO] [stderr] Checking ordered-float v2.5.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1 (https://github.com/aldanor/hdf5-rust?rev=ae86d5f7841d1ccb4791670c32df8e97b146ad72#ae86d5f7)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-f82ad6a3eb4eab8d/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/git/checkouts/hdf5-rust-c1072d7a2617f7d8/ae86d5f/hdf5-sys/build.rs:544:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55c3e40cda00 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55c3e40cda00 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55c3e40cda00 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55c3e40cda00 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55c3e40ec76f - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x55c3e40cae95 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x55c3e40cfa8b - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55c3e40cfa8b - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55c3e40cfa8b - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55c3e40cf561 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55c3e40d00a0 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:625:17 [INFO] [stderr] 11: 0x55c3e3ef1fe3 - std::panicking::begin_panic::{{closure}}::he2935c8cca4ed4fd [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x55c3e3ed7fb9 - std::sys_common::backtrace::__rust_end_short_backtrace::hcf68c6f8cb3f8c01 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55c3e3ef1f19 - std::panicking::begin_panic::hf9e29e8540d0278d [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x55c3e3ec5df9 - build_script_build::LibrarySearcher::try_locate_hdf5_library::ha6a1478f11426d6c [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/hdf5-rust-c1072d7a2617f7d8/ae86d5f/hdf5-sys/build.rs:544:13 [INFO] [stderr] 15: 0x55c3e3ec760c - build_script_build::main::hfb3f6e86d6045d70 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/hdf5-rust-c1072d7a2617f7d8/ae86d5f/hdf5-sys/build.rs:642:9 [INFO] [stderr] 16: 0x55c3e3ecbbfb - core::ops::function::FnOnce::call_once::h07dd637ddcd488ce [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55c3e3ed3c5e - std::sys_common::backtrace::__rust_begin_short_backtrace::h572999f420c7e54a [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55c3e3ed2731 - std::rt::lang_start::{{closure}}::h91f2162d47535437 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/rt.rs:49:18 [INFO] [stderr] 19: 0x55c3e40d04da - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55c3e40d04da - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x55c3e40d04da - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x55c3e40d04da - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/panic.rs:433:14 [INFO] [stderr] 23: 0x55c3e40d04da - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/rt.rs:34:21 [INFO] [stderr] 24: 0x55c3e3ed2710 - std::rt::lang_start::he151b85766713043 [INFO] [stderr] at /rustc/3bb2879ea9e58d65b875f9a98df44f4a43ce2597/library/std/src/rt.rs:48:5 [INFO] [stderr] 25: 0x55c3e3ec8b0c - main [INFO] [stderr] 26: 0x7f98187470b3 - __libc_start_main [INFO] [stderr] 27: 0x55c3e3ec0eae - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "291dec262738bf54dbc99ff119ec76792119e137144d3367975cc4b610b23e6d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "291dec262738bf54dbc99ff119ec76792119e137144d3367975cc4b610b23e6d", kill_on_drop: false }` [INFO] [stdout] 291dec262738bf54dbc99ff119ec76792119e137144d3367975cc4b610b23e6d