[INFO] fetching crate netcdf 0.6.1... [INFO] checking netcdf-0.6.1 against master#7dc9ff5c629753b6930ecfe9a0446538b8e25fb7 for pr-85387 [INFO] extracting crate netcdf 0.6.1 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate netcdf 0.6.1 on toolchain 7dc9ff5c629753b6930ecfe9a0446538b8e25fb7 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7dc9ff5c629753b6930ecfe9a0446538b8e25fb7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf 0.6.1 [INFO] finished tweaking crates.io crate netcdf 0.6.1 [INFO] tweaked toml for crates.io crate netcdf 0.6.1 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate netcdf 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7dc9ff5c629753b6930ecfe9a0446538b8e25fb7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded netcdf-sys v0.3.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+7dc9ff5c629753b6930ecfe9a0446538b8e25fb7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 41d32eea9468183c2a65444e97dc44ab15e5d9f2740a1d146e73939e79a486ee [INFO] running `Command { std: "docker" "start" "-a" "41d32eea9468183c2a65444e97dc44ab15e5d9f2740a1d146e73939e79a486ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "41d32eea9468183c2a65444e97dc44ab15e5d9f2740a1d146e73939e79a486ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "41d32eea9468183c2a65444e97dc44ab15e5d9f2740a1d146e73939e79a486ee", kill_on_drop: false }` [INFO] [stdout] 41d32eea9468183c2a65444e97dc44ab15e5d9f2740a1d146e73939e79a486ee [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+7dc9ff5c629753b6930ecfe9a0446538b8e25fb7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 40880c1c234a361a9fb7f77c9a6ea66a3e001f28e8c7c502595856f44740292f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "40880c1c234a361a9fb7f77c9a6ea66a3e001f28e8c7c502595856f44740292f", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.84 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling netcdf-sys v0.3.4 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling thread_local v1.1.2 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Checking getrandom v0.2.2 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking rand_core v0.6.1 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Compiling structopt-derive v0.4.14 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-9921d3ee6dd9033b/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x562e836bbc70 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x562e836bbc70 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x562e836bbc70 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x562e836bbc70 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x562e836da9ff - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x562e836b9105 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x562e836bdcfb - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x562e836bdcfb - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x562e836bdcfb - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x562e836bd7d1 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x562e836be310 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/panicking.rs:625:17 [INFO] [stderr] 11: 0x562e834e1a93 - std::panicking::begin_panic::{{closure}}::he2935c8cca4ed4fd [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x562e834c7ac9 - std::sys_common::backtrace::__rust_end_short_backtrace::hcf68c6f8cb3f8c01 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x562e834e19c9 - std::panicking::begin_panic::hf9e29e8540d0278d [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x562e834b5dc9 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h777f13d4884c83e1 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x562e834b75dc - build_script_build::main::h4486963048e63de0 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x562e834bc96b - core::ops::function::FnOnce::call_once::hdfabcabc9c0a054f [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x562e834c3d7e - std::sys_common::backtrace::__rust_begin_short_backtrace::h9eb7d6f566a06a07 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x562e834c1e21 - std::rt::lang_start::{{closure}}::h6227586e770604cd [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/rt.rs:49:18 [INFO] [stderr] 19: 0x562e836be74a - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x562e836be74a - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x562e836be74a - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x562e836be74a - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/panic.rs:433:14 [INFO] [stderr] 23: 0x562e836be74a - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/rt.rs:34:21 [INFO] [stderr] 24: 0x562e834c1e00 - std::rt::lang_start::hc4c0b1089d14abbb [INFO] [stderr] at /rustc/7dc9ff5c629753b6930ecfe9a0446538b8e25fb7/library/std/src/rt.rs:48:5 [INFO] [stderr] 25: 0x562e834b8adc - main [INFO] [stderr] 26: 0x7f59911f00b3 - __libc_start_main [INFO] [stderr] 27: 0x562e834b0eae - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "40880c1c234a361a9fb7f77c9a6ea66a3e001f28e8c7c502595856f44740292f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "40880c1c234a361a9fb7f77c9a6ea66a3e001f28e8c7c502595856f44740292f", kill_on_drop: false }` [INFO] [stdout] 40880c1c234a361a9fb7f77c9a6ea66a3e001f28e8c7c502595856f44740292f