[INFO] fetching crate d4utils 0.1.17... [INFO] checking d4utils-0.1.17 against try#b20a093d9fb1ffaa04ae9852cb034864a992bafd for pr-85073 [INFO] extracting crate d4utils 0.1.17 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate d4utils 0.1.17 on toolchain b20a093d9fb1ffaa04ae9852cb034864a992bafd [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4utils 0.1.17 [INFO] finished tweaking crates.io crate d4utils 0.1.17 [INFO] tweaked toml for crates.io crate d4utils 0.1.17 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate crates.io crate d4utils 0.1.17 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded d4-hts v0.1.17 [INFO] [stderr] Downloaded d4 v0.1.17 [INFO] [stderr] Downloaded d4-framefile v0.1.17 [INFO] [stderr] Downloaded d4-bigwig v0.1.17 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a147dfc1ba77d92ec0fb512647cd3bc8150e7007956ac3efa0168d1f6745a9a4 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a147dfc1ba77d92ec0fb512647cd3bc8150e7007956ac3efa0168d1f6745a9a4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a147dfc1ba77d92ec0fb512647cd3bc8150e7007956ac3efa0168d1f6745a9a4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a147dfc1ba77d92ec0fb512647cd3bc8150e7007956ac3efa0168d1f6745a9a4", kill_on_drop: false }` [INFO] [stdout] a147dfc1ba77d92ec0fb512647cd3bc8150e7007956ac3efa0168d1f6745a9a4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d829cfc992ff31ddb30fa3e7f73fbf049369ff4336eae575b2746ff2b5a4f184 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d829cfc992ff31ddb30fa3e7f73fbf049369ff4336eae575b2746ff2b5a4f184", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.90 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling regex-syntax v0.6.23 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling serde v1.0.124 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling syn v1.0.64 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling serde_derive v1.0.124 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling clang-sys v1.1.1 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.3 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking crossbeam-epoch v0.9.3 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Checking rayon-core v1.9.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v1.4.5 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.1.17 [INFO] [stderr] Compiling d4-hts v0.1.17 [INFO] [stderr] Compiling d4-bigwig v0.1.17 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.17` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-c7d64baa001f6c31/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-4883de872bf16d27/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-4883de872bf16d27/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.17/build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x557b7ac9ca60 - std::backtrace_rs::backtrace::libunwind::trace::hdcf4f90f85129e83 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x557b7ac9ca60 - std::backtrace_rs::backtrace::trace_unsynchronized::h2669e30cb82f6732 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x557b7ac9ca60 - std::sys_common::backtrace::_print_fmt::hfbda19e17f6db318 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x557b7ac9ca60 - ::fmt::h1a8751bf59281272 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x557b7acc1e3f - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x557b7ac99875 - std::io::Write::write_fmt::hd7dd3a1df9b6befb [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x557b7ac9ef2b - std::sys_common::backtrace::_print::h551e9ec8a9fa8106 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x557b7ac9ef2b - std::sys_common::backtrace::print::ha4b1c5e95fa040b3 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x557b7ac9ef2b - std::panicking::default_hook::{{closure}}::h0b34c9ab7fb9f857 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x557b7ac9ea0d - std::panicking::default_hook::h3067e8318decd17a [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x557b7ac9f4dd - std::panicking::rust_panic_with_hook::h81b8facc50f34daa [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x557b7ac9f0a7 - std::panicking::begin_panic_handler::{{closure}}::ha376ab85d95a000e [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x557b7ac9cf1c - std::sys_common::backtrace::__rust_end_short_backtrace::h6795c8afdd1a77e6 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x557b7ac9f039 - rust_begin_unwind [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x557b7a74c8d1 - core::panicking::panic_fmt::hbe99dddd3092ba3c [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x557b7a74c81d - core::panicking::panic::h3de4db67bd397eb3 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x557b7a74f812 - build_script_build::build_own_htslib::hc23dfda80980b16b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.17/build.rs:33:5 [INFO] [stderr] 17: 0x557b7a74fd2e - build_script_build::main::h12c6c640b1a2273e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.17/build.rs:65:9 [INFO] [stderr] 18: 0x557b7a751d3b - core::ops::function::FnOnce::call_once::h68f319c10a14dd5c [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x557b7a74de2e - std::sys_common::backtrace::__rust_begin_short_backtrace::hbe077f46f37c915f [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x557b7a74ed71 - std::rt::lang_start::{{closure}}::ha51a21fee675ab0e [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/rt.rs:49:18 [INFO] [stderr] 21: 0x557b7ac9f9da - core::ops::function::impls:: for &F>::call_once::h3b8c329143d7638a [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x557b7ac9f9da - std::panicking::try::do_call::h4b72c261b4eefc1b [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x557b7ac9f9da - std::panicking::try::h703d31b7896cbd49 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x557b7ac9f9da - std::panic::catch_unwind::h37cad9b35388a915 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panic.rs:431:14 [INFO] [stderr] 25: 0x557b7ac9f9da - std::rt::lang_start_internal::hab5a8a909af4f90e [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/rt.rs:34:21 [INFO] [stderr] 26: 0x557b7a74ed50 - std::rt::lang_start::h2185714f84233824 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/rt.rs:48:5 [INFO] [stderr] 27: 0x557b7a75035c - main [INFO] [stderr] 28: 0x7efdb71790b3 - __libc_start_main [INFO] [stderr] 29: 0x557b7a74d06e - _start [INFO] [stderr] 30: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "d829cfc992ff31ddb30fa3e7f73fbf049369ff4336eae575b2746ff2b5a4f184", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d829cfc992ff31ddb30fa3e7f73fbf049369ff4336eae575b2746ff2b5a4f184", kill_on_drop: false }` [INFO] [stdout] d829cfc992ff31ddb30fa3e7f73fbf049369ff4336eae575b2746ff2b5a4f184