[INFO] fetching crate d4-hts 0.1.17... [INFO] checking d4-hts-0.1.17 against try#b20a093d9fb1ffaa04ae9852cb034864a992bafd for pr-85073 [INFO] extracting crate d4-hts 0.1.17 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate d4-hts 0.1.17 on toolchain b20a093d9fb1ffaa04ae9852cb034864a992bafd [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.1.17 [INFO] finished tweaking crates.io crate d4-hts 0.1.17 [INFO] tweaked toml for crates.io crate d4-hts 0.1.17 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] be03192d8e067c25949cce8e61fcd5105bdceb29f9d57601a59b47893b417139 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "be03192d8e067c25949cce8e61fcd5105bdceb29f9d57601a59b47893b417139", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "be03192d8e067c25949cce8e61fcd5105bdceb29f9d57601a59b47893b417139", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "be03192d8e067c25949cce8e61fcd5105bdceb29f9d57601a59b47893b417139", kill_on_drop: false }` [INFO] [stdout] be03192d8e067c25949cce8e61fcd5105bdceb29f9d57601a59b47893b417139 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a58ff218285b478e1d1a2c8af29cd5e9e9e21575c5e7f9a1aed6d6cb03319e75 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a58ff218285b478e1d1a2c8af29cd5e9e9e21575c5e7f9a1aed6d6cb03319e75", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling libc v0.2.94 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-hts v0.1.17 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.17 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-70f70001ba9a0b21/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-4778be937bdcc3e5/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-4778be937bdcc3e5/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x555fcbee24e0 - std::backtrace_rs::backtrace::libunwind::trace::hdcf4f90f85129e83 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x555fcbee24e0 - std::backtrace_rs::backtrace::trace_unsynchronized::h2669e30cb82f6732 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x555fcbee24e0 - std::sys_common::backtrace::_print_fmt::hfbda19e17f6db318 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x555fcbee24e0 - ::fmt::h1a8751bf59281272 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x555fcbf0756f - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x555fcbedf305 - std::io::Write::write_fmt::hd7dd3a1df9b6befb [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x555fcbee475b - std::sys_common::backtrace::_print::h551e9ec8a9fa8106 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x555fcbee475b - std::sys_common::backtrace::print::ha4b1c5e95fa040b3 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x555fcbee475b - std::panicking::default_hook::{{closure}}::h0b34c9ab7fb9f857 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x555fcbee423d - std::panicking::default_hook::h3067e8318decd17a [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x555fcbee4d0d - std::panicking::rust_panic_with_hook::h81b8facc50f34daa [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x555fcbee48d7 - std::panicking::begin_panic_handler::{{closure}}::ha376ab85d95a000e [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x555fcbee299c - std::sys_common::backtrace::__rust_end_short_backtrace::h6795c8afdd1a77e6 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x555fcbee4869 - rust_begin_unwind [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x555fcb9a4801 - core::panicking::panic_fmt::hbe99dddd3092ba3c [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x555fcb9a474d - core::panicking::panic::h3de4db67bd397eb3 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x555fcb9a78a2 - build_script_build::build_own_htslib::h43c9bd51b1603a31 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:33:5 [INFO] [stderr] 17: 0x555fcb9a7dbe - build_script_build::main::hf4b8b9258547877c [INFO] [stderr] at /opt/rustwide/workdir/build.rs:65:9 [INFO] [stderr] 18: 0x555fcb9a6dbb - core::ops::function::FnOnce::call_once::hf51712d85c08c228 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x555fcb9a5d5e - std::sys_common::backtrace::__rust_begin_short_backtrace::h5a0b4b61787fa1d7 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x555fcb9a6ca1 - std::rt::lang_start::{{closure}}::h1652fb2f3acf3c13 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/rt.rs:49:18 [INFO] [stderr] 21: 0x555fcbee510a - core::ops::function::impls:: for &F>::call_once::h3b8c329143d7638a [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x555fcbee510a - std::panicking::try::do_call::h4b72c261b4eefc1b [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x555fcbee510a - std::panicking::try::h703d31b7896cbd49 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x555fcbee510a - std::panic::catch_unwind::h37cad9b35388a915 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/panic.rs:431:14 [INFO] [stderr] 25: 0x555fcbee510a - std::rt::lang_start_internal::hab5a8a909af4f90e [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/rt.rs:34:21 [INFO] [stderr] 26: 0x555fcb9a6c80 - std::rt::lang_start::h875802babc362432 [INFO] [stderr] at /rustc/b20a093d9fb1ffaa04ae9852cb034864a992bafd/library/std/src/rt.rs:48:5 [INFO] [stderr] 27: 0x555fcb9a83ec - main [INFO] [stderr] 28: 0x7f77442fb0b3 - __libc_start_main [INFO] [stderr] 29: 0x555fcb9a4f9e - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "a58ff218285b478e1d1a2c8af29cd5e9e9e21575c5e7f9a1aed6d6cb03319e75", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a58ff218285b478e1d1a2c8af29cd5e9e9e21575c5e7f9a1aed6d6cb03319e75", kill_on_drop: false }` [INFO] [stdout] a58ff218285b478e1d1a2c8af29cd5e9e9e21575c5e7f9a1aed6d6cb03319e75