[INFO] fetching crate bioutils 0.1.8... [INFO] checking bioutils-0.1.8 against try#b20a093d9fb1ffaa04ae9852cb034864a992bafd for pr-85073 [INFO] extracting crate bioutils 0.1.8 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate bioutils 0.1.8 on toolchain b20a093d9fb1ffaa04ae9852cb034864a992bafd [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate bioutils 0.1.8 [INFO] finished tweaking crates.io crate bioutils 0.1.8 [INFO] tweaked toml for crates.io crate bioutils 0.1.8 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate bioutils 0.1.8 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ftp v3.0.1 [INFO] [stderr] Downloaded seq_io v0.3.1 [INFO] [stderr] Downloaded suffix_array v0.5.0 [INFO] [stderr] Downloaded sacabase v2.0.0 [INFO] [stderr] Downloaded cdivsufsort v2.0.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bba82de9e48b9030252cfa7d4a11baa81eb186cf860f14136cff1fba56a8fc22 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "bba82de9e48b9030252cfa7d4a11baa81eb186cf860f14136cff1fba56a8fc22", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bba82de9e48b9030252cfa7d4a11baa81eb186cf860f14136cff1fba56a8fc22", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bba82de9e48b9030252cfa7d4a11baa81eb186cf860f14136cff1fba56a8fc22", kill_on_drop: false }` [INFO] [stdout] bba82de9e48b9030252cfa7d4a11baa81eb186cf860f14136cff1fba56a8fc22 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 84cdc38a25e0a68a4f1cc19162b6ac11a84b19d239a1d8d3a81b1956fd0f1c14 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "84cdc38a25e0a68a4f1cc19162b6ac11a84b19d239a1d8d3a81b1956fd0f1c14", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling syn v1.0.64 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling serde v1.0.125 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling serde_derive v1.0.125 [INFO] [stderr] Checking pin-project-lite v0.2.6 [INFO] [stderr] Checking bytes v1.0.1 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Checking matches v0.1.8 [INFO] [stderr] Checking foreign-types-shared v0.1.1 [INFO] [stderr] Checking tinyvec_macros v0.1.0 [INFO] [stderr] Checking openssl-probe v0.1.2 [INFO] [stderr] Checking pin-utils v0.1.0 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Checking futures-task v0.3.13 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Compiling native-tls v0.2.7 [INFO] [stderr] Checking try-lock v0.2.3 [INFO] [stderr] Checking percent-encoding v2.1.0 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Checking slab v0.4.2 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Checking gimli v0.23.0 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Checking httpdate v0.3.2 [INFO] [stderr] Checking tower-service v0.3.1 [INFO] [stderr] Compiling encoding_rs v0.8.28 [INFO] [stderr] Compiling curl v0.4.34 [INFO] [stderr] Checking regex-syntax v0.3.9 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking object v0.23.0 [INFO] [stderr] Checking mime v0.3.16 [INFO] [stderr] Checking ipnet v2.3.0 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking scoped_threadpool v0.1.9 [INFO] [stderr] Checking lazy_static v0.1.16 [INFO] [stderr] Checking regex-syntax v0.6.23 [INFO] [stderr] Checking base64 v0.13.0 [INFO] [stderr] Checking unicode-segmentation v1.7.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.3 [INFO] [stderr] Compiling memoffset v0.6.3 [INFO] [stderr] Compiling tokio v1.4.0 [INFO] [stderr] Compiling indexmap v1.6.2 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Checking tracing-core v0.1.17 [INFO] [stderr] Checking futures-channel v0.3.13 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Checking foreign-types v0.3.2 [INFO] [stderr] Checking tinyvec v1.1.1 [INFO] [stderr] Checking http v0.2.3 [INFO] [stderr] Checking futures-util v0.3.13 [INFO] [stderr] Checking form_urlencoded v1.0.1 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking phf v0.8.0 [INFO] [stderr] Checking tendril v0.4.2 [INFO] [stderr] Checking want v0.3.0 [INFO] [stderr] Checking tracing v0.1.25 [INFO] [stderr] Checking sacabase v2.0.0 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Checking unicode-normalization v0.1.17 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking num v0.1.42 [INFO] [stderr] Checking crossbeam-epoch v0.9.3 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking crossbeam-queue v0.3.1 [INFO] [stderr] Checking mio v0.7.11 [INFO] [stderr] Checking time v0.1.43 [INFO] [stderr] Checking socket2 v0.3.19 [INFO] [stderr] Checking thread-id v2.0.0 [INFO] [stderr] Checking memchr v0.1.11 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Compiling openssl-sys v0.9.61 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling curl-sys v0.4.40+curl-7.75.0 [INFO] [stderr] Compiling cdivsufsort v2.0.0 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking thread_local v0.2.7 [INFO] [stderr] Checking aho-corasick v0.5.3 [INFO] [stderr] Checking rand_core v0.6.2 [INFO] [stderr] Checking chrono v0.2.25 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Checking http-body v0.4.1 [INFO] [stderr] Checking crossbeam v0.8.0 [INFO] [stderr] Checking regex v0.1.80 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking addr2line v0.14.1 [INFO] [stderr] Checking regex v1.4.5 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Checking idna v0.2.2 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Compiling openssl v0.10.33 [INFO] [stderr] Checking suffix_array v0.5.0 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Checking ftp v3.0.1 [INFO] [stderr] Checking backtrace v0.3.56 [INFO] [stderr] Checking url v2.2.1 [INFO] [stderr] Checking error-chain v0.12.4 [INFO] [stderr] Compiling phf_generator v0.8.0 [INFO] [stderr] Compiling phf_codegen v0.8.0 [INFO] [stderr] Compiling string_cache_codegen v0.5.1 [INFO] [stderr] Checking string_cache v0.8.1 [INFO] [stderr] Checking serde_urlencoded v0.7.0 [INFO] [stderr] Checking tokio-util v0.6.5 [INFO] [stderr] Checking tokio-native-tls v0.3.0 [INFO] [stderr] Checking h2 v0.3.2 [INFO] [stderr] Compiling html5ever v0.25.1 [INFO] [stderr] Compiling pin-project-internal v1.0.6 [INFO] [stderr] Checking pin-project v1.0.6 [INFO] [stderr] Checking hyper v0.14.4 [INFO] [stderr] Checking hyper-tls v0.5.0 [INFO] [stderr] Compiling markup5ever v0.10.0 [INFO] [stderr] Checking seq_io v0.3.1 [INFO] [stderr] Checking reqwest v0.11.2 [INFO] [stderr] Checking xml5ever v0.16.1 [INFO] [stderr] Checking markup5ever_rcdom v0.1.0 [INFO] [stderr] Checking select v0.5.0 [INFO] [stderr] Checking bioutils v0.1.8 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/utils/check.rs:41:5 [INFO] [stdout] | [INFO] [stdout] 41 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::charsets::PERCENTAGE_RANGE` [INFO] [stdout] --> src/utils/check.rs:42:5 [INFO] [stdout] | [INFO] [stdout] 42 | use crate::charsets::PERCENTAGE_RANGE; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::utils::get::value` [INFO] [stdout] --> src/utils/check.rs:45:5 [INFO] [stdout] | [INFO] [stdout] 45 | use crate::utils::get::value; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::charsets::iupac::*` [INFO] [stdout] --> src/utils/get/value.rs:21:5 [INFO] [stdout] | [INFO] [stdout] 21 | use crate::charsets::iupac::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::charsets::quality::*` [INFO] [stdout] --> src/utils/get/value.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 22 | use crate::charsets::quality::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::rngs::ThreadRng` [INFO] [stdout] --> src/utils/get/value.rs:23:5 [INFO] [stdout] | [INFO] [stdout] 23 | use rand::rngs::ThreadRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::seq::SliceRandom` [INFO] [stdout] --> src/utils/get/value.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | use rand::seq::SliceRandom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::convert::TryInto` [INFO] [stdout] --> src/utils/get/value.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use std::convert::TryInto; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Cursor`, `Read`, `self` [INFO] [stdout] --> src/files/fastq/hash.rs:5:15 [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::{self, Cursor, Read}; [INFO] [stdout] | ^^^^ ^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/files/fastq/hash.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Reader` [INFO] [stdout] --> src/files/fastq/hash.rs:7:21 [INFO] [stdout] | [INFO] [stdout] 7 | use seq_io::fastq::{Reader,Record}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `seq_io::parallel::parallel_fastq` [INFO] [stdout] --> src/files/fastq/hash.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use seq_io::parallel::parallel_fastq; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::File` [INFO] [stdout] --> src/files/fastq/hash.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::fs::File; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::BufWriter` [INFO] [stdout] --> src/files/fastq/hash.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use std::io::BufWriter; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/utils/check.rs:41:5 [INFO] [stdout] | [INFO] [stdout] 41 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::charsets::PERCENTAGE_RANGE` [INFO] [stdout] --> src/utils/check.rs:42:5 [INFO] [stdout] | [INFO] [stdout] 42 | use crate::charsets::PERCENTAGE_RANGE; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::utils::get::value` [INFO] [stdout] --> src/utils/check.rs:45:5 [INFO] [stdout] | [INFO] [stdout] 45 | use crate::utils::get::value; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::charsets::iupac::*` [INFO] [stdout] --> src/utils/get/value.rs:21:5 [INFO] [stdout] | [INFO] [stdout] 21 | use crate::charsets::iupac::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::charsets::quality::*` [INFO] [stdout] --> src/utils/get/value.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 22 | use crate::charsets::quality::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::rngs::ThreadRng` [INFO] [stdout] --> src/utils/get/value.rs:23:5 [INFO] [stdout] | [INFO] [stdout] 23 | use rand::rngs::ThreadRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::seq::SliceRandom` [INFO] [stdout] --> src/utils/get/value.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | use rand::seq::SliceRandom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::convert::TryInto` [INFO] [stdout] --> src/utils/get/value.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use std::convert::TryInto; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Cursor`, `Read`, `self` [INFO] [stdout] --> src/files/fastq/hash.rs:5:15 [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::{self, Cursor, Read}; [INFO] [stdout] | ^^^^ ^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/files/fastq/hash.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Reader` [INFO] [stdout] --> src/files/fastq/hash.rs:7:21 [INFO] [stdout] | [INFO] [stdout] 7 | use seq_io::fastq::{Reader,Record}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `seq_io::parallel::parallel_fastq` [INFO] [stdout] --> src/files/fastq/hash.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use seq_io::parallel::parallel_fastq; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::File` [INFO] [stdout] --> src/files/fastq/hash.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::fs::File; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::BufWriter` [INFO] [stdout] --> src/files/fastq/hash.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use std::io::BufWriter; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num` [INFO] [stdout] --> src/utils/hashmap/algorithms.rs:9:79 [INFO] [stdout] | [INFO] [stdout] 9 | pub fn value_cosine(hm1: &HashMap, u64>, hm2: &HashMap, u64>, num: Vec) -> f64 { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_num` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num` [INFO] [stdout] --> src/utils/hashmap/algorithms.rs:18:74 [INFO] [stdout] | [INFO] [stdout] 18 | pub fn jaccard(hm1: &HashMap, u64>, hm2: &HashMap, u64>, num: Vec) -> f64 { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_num` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `bytes_2_i` [INFO] [stdout] --> src/utils/get/item.rs:8:13 [INFO] [stdout] | [INFO] [stdout] 8 | let mut bytes_2_i = bytes_2.len() - 1; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bytes_2_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `record` [INFO] [stdout] --> src/files/fastq/hash.rs:20:17 [INFO] [stdout] | [INFO] [stdout] 20 | Err(record) => continue [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_record` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `record` [INFO] [stdout] --> src/files/fastq/hash.rs:59:17 [INFO] [stdout] | [INFO] [stdout] 59 | Err(record) => continue [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_record` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num` [INFO] [stdout] --> src/utils/hashmap/algorithms.rs:9:79 [INFO] [stdout] | [INFO] [stdout] 9 | pub fn value_cosine(hm1: &HashMap, u64>, hm2: &HashMap, u64>, num: Vec) -> f64 { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_num` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num` [INFO] [stdout] --> src/utils/hashmap/algorithms.rs:18:74 [INFO] [stdout] | [INFO] [stdout] 18 | pub fn jaccard(hm1: &HashMap, u64>, hm2: &HashMap, u64>, num: Vec) -> f64 { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_num` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `bytes_2_i` [INFO] [stdout] --> src/utils/get/item.rs:8:13 [INFO] [stdout] | [INFO] [stdout] 8 | let mut bytes_2_i = bytes_2.len() - 1; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bytes_2_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `record` [INFO] [stdout] --> src/files/fastq/hash.rs:20:17 [INFO] [stdout] | [INFO] [stdout] 20 | Err(record) => continue [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_record` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `record` [INFO] [stdout] --> src/files/fastq/hash.rs:59:17 [INFO] [stdout] | [INFO] [stdout] 59 | Err(record) => continue [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_record` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/utils/get/item.rs:8:9 [INFO] [stdout] | [INFO] [stdout] 8 | let mut bytes_2_i = bytes_2.len() - 1; [INFO] [stdout] | ----^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/utils/get/item.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let mut bytes_2: Vec = bytes_2.iter().map(|c| *c as u16).collect(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/utils/get/item.rs:8:9 [INFO] [stdout] | [INFO] [stdout] 8 | let mut bytes_2_i = bytes_2.len() - 1; [INFO] [stdout] | ----^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/utils/get/item.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let mut bytes_2: Vec = bytes_2.iter().map(|c| *c as u16).collect(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: comparison is useless due to type limits [INFO] [stdout] --> src/utils/get/item.rs:11:11 [INFO] [stdout] | [INFO] [stdout] 11 | while bytes_1_i >= 0 { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_comparisons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 22 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: comparison is useless due to type limits [INFO] [stdout] --> src/utils/get/item.rs:11:11 [INFO] [stdout] | [INFO] [stdout] 11 | while bytes_1_i >= 0 { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_comparisons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 22 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude::*` [INFO] [stdout] --> examples/fastq_summary.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `seq_io::fastq::Record as FastqRecord` [INFO] [stdout] --> examples/fastq_summary.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use seq_io::fastq::Record as FastqRecord; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bioutils::files::fastq::hash` [INFO] [stdout] --> examples/filter_paired.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use bioutils::files::fastq::hash; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `seq_io::fastq::Record as FastqRecord` [INFO] [stdout] --> examples/filter_paired.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use seq_io::fastq::Record as FastqRecord; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `fq1_path` [INFO] [stdout] --> examples/fastq_summary.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let fq1_path = &samples_directory.join(fq1_gz); [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_fq1_path` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `fq1_reader` [INFO] [stdout] --> examples/fastq_summary.rs:27:13 [INFO] [stdout] | [INFO] [stdout] 27 | let mut fq1_reader = seq_io::fasta::Reader::new(fq1); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_fq1_reader` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> examples/fastq_summary.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | let mut fq1_reader = seq_io::fasta::Reader::new(fq1); [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> examples/fastq_summary.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | std::fs::create_dir_all(&samples_directory); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> examples/filter_paired.rs:34:9 [INFO] [stdout] | [INFO] [stdout] 34 | let mut fq1_reader = seq_io::fastq::Reader::new(fq1); [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> examples/filter_paired.rs:38:9 [INFO] [stdout] | [INFO] [stdout] 38 | let mut fq2_reader = seq_io::fastq::Reader::new(fq2); [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `record_head` [INFO] [stdout] --> examples/download_read_align_seq_io.rs:78:13 [INFO] [stdout] | [INFO] [stdout] 78 | let record_head = record.head(); [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_record_head` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `positions_forward` [INFO] [stdout] --> examples/download_read_align_seq_io.rs:82:13 [INFO] [stdout] | [INFO] [stdout] 82 | let positions_forward = fastq_aligner(&mut fq_reader, sa); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_positions_forward` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `positions_reverse` [INFO] [stdout] --> examples/download_read_align_seq_io.rs:88:13 [INFO] [stdout] | [INFO] [stdout] 88 | let positions_reverse = fastq_aligner(&mut fq_reader, sar); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_positions_reverse` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `positions` [INFO] [stdout] --> examples/download_read_align_seq_io.rs:104:13 [INFO] [stdout] | [INFO] [stdout] 104 | let positions = sa.search_all(seq); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_positions` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sa` [INFO] [stdout] --> examples/download_read_align_seq_io.rs:93:67 [INFO] [stdout] | [INFO] [stdout] 93 | pub fn fastq_aligner(fq_reader: &mut seq_io::fastq::Reader, sa: SuffixArray) [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_sa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 15s [INFO] running `Command { std: "docker" "inspect" "84cdc38a25e0a68a4f1cc19162b6ac11a84b19d239a1d8d3a81b1956fd0f1c14", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "84cdc38a25e0a68a4f1cc19162b6ac11a84b19d239a1d8d3a81b1956fd0f1c14", kill_on_drop: false }` [INFO] [stdout] 84cdc38a25e0a68a4f1cc19162b6ac11a84b19d239a1d8d3a81b1956fd0f1c14