[INFO] cloning repository https://github.com/Fede-Berga/Variation_Graph
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Fede-Berga/Variation_Graph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFede-Berga%2FVariation_Graph", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFede-Berga%2FVariation_Graph'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6fe6fa8839989ba50dcb08e8ac166cd2eb757226
[INFO] checking Fede-Berga/Variation_Graph against try#b20a093d9fb1ffaa04ae9852cb034864a992bafd for pr-85073
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFede-Berga%2FVariation_Graph" "/workspace/builds/worker-2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Fede-Berga/Variation_Graph on toolchain b20a093d9fb1ffaa04ae9852cb034864a992bafd
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Fede-Berga/Variation_Graph
[INFO] finished tweaking git repo https://github.com/Fede-Berga/Variation_Graph
[INFO] tweaked toml for git repo https://github.com/Fede-Berga/Variation_Graph written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate git repo https://github.com/Fede-Berga/Variation_Graph already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/chfi/rs-handlegraph`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded bv v0.11.1
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 78eef6557918e32bf492753c5b869f55c0f6215c4b02a1a355f7bca21f996656
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "78eef6557918e32bf492753c5b869f55c0f6215c4b02a1a355f7bca21f996656", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "78eef6557918e32bf492753c5b869f55c0f6215c4b02a1a355f7bca21f996656", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "78eef6557918e32bf492753c5b869f55c0f6215c4b02a1a355f7bca21f996656", kill_on_drop: false }`
[INFO] [stdout] 78eef6557918e32bf492753c5b869f55c0f6215c4b02a1a355f7bca21f996656
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b20a093d9fb1ffaa04ae9852cb034864a992bafd" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b2a3b8c0979d21aafb25063c27f6180efc6b350c6b8b3875f8518108edaaad7c
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "b2a3b8c0979d21aafb25063c27f6180efc6b350c6b8b3875f8518108edaaad7c", kill_on_drop: false }`
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[INFO] [stderr]     Checking bytemuck v1.5.1
[INFO] [stderr]     Checking thiserror v1.0.24
[INFO] [stderr]     Checking bio-types v0.11.0
[INFO] [stderr]     Checking bstr v0.2.16
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking gfa v0.10.0
[INFO] [stderr]     Checking statrs v0.13.0
[INFO] [stderr]     Checking handlegraph v0.7.0-alpha.4 (https://github.com/chfi/rs-handlegraph#866f637a)
[INFO] [stderr]     Checking variation_graph v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Interval`
[INFO] [stdout]  --> src/alignment_parser.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 |     Interval,
[INFO] [stdout]   |     ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs`
[INFO] [stdout]  --> src/multiple_alignment_format/mod.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::fs;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0468]: an `extern crate` loading macros must be at the crate root
[INFO] [stdout]  --> src/multiple_alignment_format/mod.rs:3:1
[INFO] [stdout]   |
[INFO] [stdout] 3 | extern crate maplit;
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `MAFBlock`
[INFO] [stdout]   --> src/multiple_alignment_format/output.rs:71:9
[INFO] [stdout]    |
[INFO] [stdout] 71 |     use MAFBlock;
[INFO] [stdout]    |         ^^^^^^^^ no external crate `MAFBlock`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `MAFBlockEntry`
[INFO] [stdout]   --> src/multiple_alignment_format/output.rs:72:9
[INFO] [stdout]    |
[INFO] [stdout] 72 |     use MAFBlockEntry;
[INFO] [stdout]    |         ^^^^^^^^^^^^^ no external crate `MAFBlockEntry`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `MAFBlockAlignedEntry`
[INFO] [stdout]   --> src/multiple_alignment_format/output.rs:73:9
[INFO] [stdout]    |
[INFO] [stdout] 73 |     use MAFBlockAlignedEntry;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^ no external crate `MAFBlockAlignedEntry`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `MAFBlockUnalignedEntry`
[INFO] [stdout]   --> src/multiple_alignment_format/output.rs:74:9
[INFO] [stdout]    |
[INFO] [stdout] 74 |     use MAFBlockUnalignedEntry;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^ no external crate `MAFBlockUnalignedEntry`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `Strand`
[INFO] [stdout]   --> src/multiple_alignment_format/output.rs:75:9
[INFO] [stdout]    |
[INFO] [stdout] 75 |     use Strand;
[INFO] [stdout]    |         ^^^^^^ no external crate `Strand`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `AlignedContext`
[INFO] [stdout]   --> src/multiple_alignment_format/output.rs:76:9
[INFO] [stdout]    |
[INFO] [stdout] 76 |     use AlignedContext;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^ no external crate `AlignedContext`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `AlignedContextStatus`
[INFO] [stdout]   --> src/multiple_alignment_format/output.rs:77:9
[INFO] [stdout]    |
[INFO] [stdout] 77 |     use AlignedContextStatus;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^ no external crate `AlignedContextStatus`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `UnalignedContextStatus`
[INFO] [stdout]   --> src/multiple_alignment_format/output.rs:78:9
[INFO] [stdout]    |
[INFO] [stdout] 78 |     use UnalignedContextStatus;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^ no external crate `UnalignedContextStatus`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Interval`
[INFO] [stdout]  --> src/alignment_parser.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 |     Interval,
[INFO] [stdout]   |     ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 9 previous errors; 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0432, E0468.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0432`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `variation_graph`
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] warning: unused import: `FastaParser`
[INFO] [stdout]  --> tests/parser_test.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 |     FastaParser,
[INFO] [stdout]   |     ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `VariationGraphError`
[INFO] [stdout]  --> tests/variation_graph_test.rs:7:39
[INFO] [stdout]   |
[INFO] [stdout] 7 |     variation_graph::{VariationGraph, VariationGraphError},
[INFO] [stdout]   |                                       ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "b2a3b8c0979d21aafb25063c27f6180efc6b350c6b8b3875f8518108edaaad7c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b2a3b8c0979d21aafb25063c27f6180efc6b350c6b8b3875f8518108edaaad7c", kill_on_drop: false }`
[INFO] [stdout] b2a3b8c0979d21aafb25063c27f6180efc6b350c6b8b3875f8518108edaaad7c