[INFO] fetching crate netcdf-sys 0.3.5... [INFO] checking netcdf-sys-0.3.5 against master#50e1dc1536264ab71c0850f346b12309477f29f7 for pr-85073 [INFO] extracting crate netcdf-sys 0.3.5 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate netcdf-sys 0.3.5 on toolchain 50e1dc1536264ab71c0850f346b12309477f29f7 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+50e1dc1536264ab71c0850f346b12309477f29f7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-sys 0.3.5 [INFO] finished tweaking crates.io crate netcdf-sys 0.3.5 [INFO] tweaked toml for crates.io crate netcdf-sys 0.3.5 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+50e1dc1536264ab71c0850f346b12309477f29f7" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+50e1dc1536264ab71c0850f346b12309477f29f7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+50e1dc1536264ab71c0850f346b12309477f29f7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8ff5e5d45691d49695e1be8f60a62c22c300d81f880cbe70e09d52ce15381c59 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8ff5e5d45691d49695e1be8f60a62c22c300d81f880cbe70e09d52ce15381c59", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8ff5e5d45691d49695e1be8f60a62c22c300d81f880cbe70e09d52ce15381c59", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8ff5e5d45691d49695e1be8f60a62c22c300d81f880cbe70e09d52ce15381c59", kill_on_drop: false }` [INFO] [stdout] 8ff5e5d45691d49695e1be8f60a62c22c300d81f880cbe70e09d52ce15381c59 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+50e1dc1536264ab71c0850f346b12309477f29f7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 78ef63b30e4b99dedf205c216d2f92ddfb30fcd4223488de6b6d554fcb9a30b0 [INFO] running `Command { std: "docker" "start" "-a" "78ef63b30e4b99dedf205c216d2f92ddfb30fcd4223488de6b6d554fcb9a30b0", kill_on_drop: false }` [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling netcdf-sys v0.3.5 (/opt/rustwide/workdir) [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-3ee6ce1a0f4e249d/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e63173dfc0 - std::backtrace_rs::backtrace::libunwind::trace::hdcf4f90f85129e83 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55e63173dfc0 - std::backtrace_rs::backtrace::trace_unsynchronized::h2669e30cb82f6732 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55e63173dfc0 - std::sys_common::backtrace::_print_fmt::hfbda19e17f6db318 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55e63173dfc0 - ::fmt::h1a8751bf59281272 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55e63175caff - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x55e63173b455 - std::io::Write::write_fmt::hd7dd3a1df9b6befb [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x55e63174003b - std::sys_common::backtrace::_print::h551e9ec8a9fa8106 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55e63174003b - std::sys_common::backtrace::print::ha4b1c5e95fa040b3 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55e63174003b - std::panicking::default_hook::{{closure}}::h0b34c9ab7fb9f857 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55e63173fb1d - std::panicking::default_hook::h3067e8318decd17a [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55e6317405ed - std::panicking::rust_panic_with_hook::h81b8facc50f34daa [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55e63155b983 - std::panicking::begin_panic::{{closure}}::h1e6cdb5ab29fb1c8 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55e63155f5e9 - std::sys_common::backtrace::__rust_end_short_backtrace::hd8798532463ca724 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55e63155b8b9 - std::panicking::begin_panic::h52ff1b6550e2570e [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55e63152fef9 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h12ad45af4ec40960 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55e63153170c - build_script_build::main::h8dc0b4a4a7e94ca0 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55e63153690b - core::ops::function::FnOnce::call_once::h3ac854336c5b1800 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55e63153ceae - std::sys_common::backtrace::__rust_begin_short_backtrace::h76a47c22550d90e6 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55e63153af61 - std::rt::lang_start::{{closure}}::h65d2f7e8721c83e0 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/rt.rs:49:18 [INFO] [stderr] 19: 0x55e6317409ea - core::ops::function::impls:: for &F>::call_once::h3b8c329143d7638a [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55e6317409ea - std::panicking::try::do_call::h4b72c261b4eefc1b [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55e6317409ea - std::panicking::try::h703d31b7896cbd49 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55e6317409ea - std::panic::catch_unwind::h37cad9b35388a915 [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x55e6317409ea - std::rt::lang_start_internal::hab5a8a909af4f90e [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/rt.rs:34:21 [INFO] [stderr] 24: 0x55e63153af40 - std::rt::lang_start::hdbd3e5c15fb3e7fe [INFO] [stderr] at /rustc/50e1dc1536264ab71c0850f346b12309477f29f7/library/std/src/rt.rs:48:5 [INFO] [stderr] 25: 0x55e631532c0c - main [INFO] [stderr] 26: 0x7f2497d610b3 - __libc_start_main [INFO] [stderr] 27: 0x55e63152ae4e - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "78ef63b30e4b99dedf205c216d2f92ddfb30fcd4223488de6b6d554fcb9a30b0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "78ef63b30e4b99dedf205c216d2f92ddfb30fcd4223488de6b6d554fcb9a30b0", kill_on_drop: false }` [INFO] [stdout] 78ef63b30e4b99dedf205c216d2f92ddfb30fcd4223488de6b6d554fcb9a30b0