[INFO] cloning repository https://github.com/mooreryan/bio_ballyhoo [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mooreryan/bio_ballyhoo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 4895a9c2f64f3443dbc032002a5d6a371a1062d0 [INFO] checking mooreryan/bio_ballyhoo against master#50e1dc1536264ab71c0850f346b12309477f29f7 for pr-85073 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mooreryan/bio_ballyhoo on toolchain 50e1dc1536264ab71c0850f346b12309477f29f7 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+50e1dc1536264ab71c0850f346b12309477f29f7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mooreryan/bio_ballyhoo [INFO] finished tweaking git repo https://github.com/mooreryan/bio_ballyhoo [INFO] tweaked toml for git repo https://github.com/mooreryan/bio_ballyhoo written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/mooreryan/bio_ballyhoo already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+50e1dc1536264ab71c0850f346b12309477f29f7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+50e1dc1536264ab71c0850f346b12309477f29f7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] be97f21b82c1e78f441cff611e455d8491c209eff661eead9e937ce60a87054a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "be97f21b82c1e78f441cff611e455d8491c209eff661eead9e937ce60a87054a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "be97f21b82c1e78f441cff611e455d8491c209eff661eead9e937ce60a87054a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "be97f21b82c1e78f441cff611e455d8491c209eff661eead9e937ce60a87054a", kill_on_drop: false }` [INFO] [stdout] be97f21b82c1e78f441cff611e455d8491c209eff661eead9e937ce60a87054a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+50e1dc1536264ab71c0850f346b12309477f29f7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4e3d88e58abb00aa7e8e14f590fae9d1a78d330c23642e777a92a3a844564dff [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "4e3d88e58abb00aa7e8e14f590fae9d1a78d330c23642e777a92a3a844564dff", kill_on_drop: false }` [INFO] [stderr] Compiling serde_derive v1.0.123 [INFO] [stderr] Compiling serde v1.0.123 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking maplit v1.0.2 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking thread_local v1.1.3 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking terminal_size v0.1.16 [INFO] [stderr] Checking getrandom v0.2.2 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Checking regex v1.4.3 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rand_core v0.6.2 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking ndarray v0.13.1 [INFO] [stderr] Checking console v0.14.0 [INFO] [stderr] Checking indicatif v0.15.0 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Compiling structopt-derive v0.4.14 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking bio-types v0.10.0 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bstr v0.2.15 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.5 [INFO] [stderr] Checking structopt v0.3.21 [INFO] [stderr] Checking make_reads v0.1.0 (/opt/rustwide/workdir/make_reads) [INFO] [stderr] Checking derep v0.1.0 (/opt/rustwide/workdir/derep) [INFO] [stderr] Checking msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity) [INFO] [stderr] Checking simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 31s [INFO] running `Command { std: "docker" "inspect" "4e3d88e58abb00aa7e8e14f590fae9d1a78d330c23642e777a92a3a844564dff", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4e3d88e58abb00aa7e8e14f590fae9d1a78d330c23642e777a92a3a844564dff", kill_on_drop: false }` [INFO] [stdout] 4e3d88e58abb00aa7e8e14f590fae9d1a78d330c23642e777a92a3a844564dff