[INFO] cloning repository https://github.com/NickRoz1/gbam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/NickRoz1/gbam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ccf48d377cfa9f340c64a05ed5c1acb23fbc0204 [INFO] checking NickRoz1/gbam against master#a5f164faad4a2fed606b8160fd7ecd2d5cbba381 for pr-84920 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/NickRoz1/gbam on toolchain a5f164faad4a2fed606b8160fd7ecd2d5cbba381 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/NickRoz1/gbam [INFO] finished tweaking git repo https://github.com/NickRoz1/gbam [INFO] tweaked toml for git repo https://github.com/NickRoz1/gbam written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/NickRoz1/gbam already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating git repository `https://github.com/NickRoz1/bam_parallel` [INFO] [stderr] Updating crates.io index [INFO] [stderr] error: the lock file /workspace/builds/worker-8/source/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag. [INFO] the lockfile is outdated, regenerating it [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating git repository `https://github.com/NickRoz1/bam_parallel` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-macros-backend v0.13.2 [INFO] [stderr] Downloaded indoc v0.3.6 [INFO] [stderr] Downloaded nanorand v0.5.2 [INFO] [stderr] Downloaded indoc-impl v0.3.6 [INFO] [stderr] Downloaded pyo3-macros v0.13.2 [INFO] [stderr] Downloaded pyo3 v0.13.2 [INFO] [stderr] Downloaded spinning_top v0.2.3 [INFO] [stderr] Downloaded flume v0.10.5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3da948bf5497023009885171f84a2ee2e8a7565e7628c19ceff1d0d01c7c6dc8 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3da948bf5497023009885171f84a2ee2e8a7565e7628c19ceff1d0d01c7c6dc8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3da948bf5497023009885171f84a2ee2e8a7565e7628c19ceff1d0d01c7c6dc8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3da948bf5497023009885171f84a2ee2e8a7565e7628c19ceff1d0d01c7c6dc8", kill_on_drop: false }` [INFO] [stdout] 3da948bf5497023009885171f84a2ee2e8a7565e7628c19ceff1d0d01c7c6dc8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 981554e2f7c433c8958734bb4f2383d76869342fe9e4d820c3b89c0f814fc77e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "981554e2f7c433c8958734bb4f2383d76869342fe9e4d820c3b89c0f814fc77e", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling libc v0.2.94 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling serde_derive v1.0.125 [INFO] [stderr] Compiling zstd-safe v2.0.6+zstd.1.4.7 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Compiling serde v1.0.125 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling pyo3 v0.13.2 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Checking spinning_top v0.2.3 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling jobserver v0.1.22 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking num_cpus v0.2.13 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Compiling syn v1.0.72 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking nanorand v0.5.2 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling zstd-sys v1.4.18+zstd.1.4.7 [INFO] [stderr] Compiling pyo3-macros-backend v0.13.2 [INFO] [stderr] Compiling pin-project-internal v1.0.7 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling structopt-derive v0.4.14 [INFO] [stderr] Compiling pyo3-macros v0.13.2 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Checking inventory v0.1.10 [INFO] [stderr] Checking pin-project v1.0.7 [INFO] [stderr] Checking flume v0.10.5 [INFO] [stderr] Checking structopt v0.3.21 [INFO] [stderr] Checking bam_parallel v0.1.0 (https://github.com/NickRoz1/bam_parallel#28a668f8) [INFO] [stderr] Checking zstd v0.5.4+zstd.1.4.7 [INFO] [stderr] Checking gbam_tools v0.1.0 (/opt/rustwide/workdir/gbam_tools) [INFO] [stdout] warning: unused imports: `SerializeMap`, `SerializeSeq`, `Serializer` [INFO] [stdout] --> gbam_tools/src/lib.rs:10:18 [INFO] [stdout] | [INFO] [stdout] 10 | use serde::ser::{SerializeMap, SerializeSeq, Serializer}; [INFO] [stdout] | ^^^^^^^^^^^^ ^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Deserializer` [INFO] [stdout] --> gbam_tools/src/lib.rs:11:26 [INFO] [stdout] | [INFO] [stdout] 11 | use serde::{Deserialize, Deserializer, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `libc` [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use libc; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ReadBytesExt` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:7:31 [INFO] [stdout] | [INFO] [stdout] 7 | use byteorder::{LittleEndian, ReadBytesExt, WriteBytesExt}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `zstd::Encoder` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | use zstd::Encoder; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `u8_size` [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:3:62 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::{field_item_size, field_type, u32_size, u64_size, u8_size, FieldType, Fields}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::ops::IndexMut` [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::ops::IndexMut; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Read` [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:14:15 [INFO] [stdout] | [INFO] [stdout] 14 | use std::io::{Read, Write}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `gzip` should have an upper camel case name [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:72:5 [INFO] [stdout] | [INFO] [stdout] 72 | gzip, [INFO] [stdout] | ^^^^ help: convert the identifier to upper camel case: `Gzip` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `lz4` should have an upper camel case name [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:73:5 [INFO] [stdout] | [INFO] [stdout] 73 | lz4, [INFO] [stdout] | ^^^ help: convert the identifier to upper camel case: `Lz4` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `Field_Meta_Map` should have an upper camel case name [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:118:12 [INFO] [stdout] | [INFO] [stdout] 118 | pub struct Field_Meta_Map(HashMap); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to upper camel case: `FieldMetaMap` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BlockMeta` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:1:19 [INFO] [stdout] | [INFO] [stdout] 1 | use super::meta::{BlockMeta, FileInfo, FileMeta, FILE_INFO_SIZE}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bit_vec::BitVec` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use bit_vec::BitVec; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `WriteBytesExt` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:6:45 [INFO] [stdout] | [INFO] [stdout] 6 | use byteorder::{LittleEndian, ReadBytesExt, WriteBytesExt}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `prelude::*`, `self` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:395:23 [INFO] [stdout] | [INFO] [stdout] 395 | use std::io::{self, prelude::*, BufReader}; [INFO] [stdout] | ^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `u64_size`, `u8_size` [INFO] [stdout] --> gbam_tools/src/single_thread/writer.rs:4:42 [INFO] [stdout] | [INFO] [stdout] 4 | field_type, is_data_field, u32_size, u64_size, u8_size, var_size_field_to_index, FieldType, [INFO] [stdout] | ^^^^^^^^ ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `flate2::write::ZlibEncoder` [INFO] [stdout] --> gbam_tools/src/writer.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use flate2::write::ZlibEncoder; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `zstd::stream::Encoder` [INFO] [stdout] --> gbam_tools/src/writer.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use zstd::stream::Encoder; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> gbam_tools/src/lib.rs:72:13 [INFO] [stdout] | [INFO] [stdout] 72 | /// Data fields [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] 73 | RefID, [INFO] [stdout] | ----- rustdoc does not generate documentation for expressions [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> gbam_tools/src/lib.rs:85:13 [INFO] [stdout] | [INFO] [stdout] 85 | /// Index fields [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] 86 | LName, [INFO] [stdout] | ----- rustdoc does not generate documentation for expressions [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `wrap_pymodule` [INFO] [stdout] --> gbam_tools/src/lib.rs:324:29 [INFO] [stdout] | [INFO] [stdout] 324 | use pyo3::{wrap_pyfunction, wrap_pymodule}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `SerializeMap`, `SerializeSeq`, `Serializer` [INFO] [stdout] --> gbam_tools/src/lib.rs:10:18 [INFO] [stdout] | [INFO] [stdout] 10 | use serde::ser::{SerializeMap, SerializeSeq, Serializer}; [INFO] [stdout] | ^^^^^^^^^^^^ ^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Deserializer` [INFO] [stdout] --> gbam_tools/src/lib.rs:11:26 [INFO] [stdout] | [INFO] [stdout] 11 | use serde::{Deserialize, Deserializer, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `libc` [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use libc; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ReadBytesExt` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:7:31 [INFO] [stdout] | [INFO] [stdout] 7 | use byteorder::{LittleEndian, ReadBytesExt, WriteBytesExt}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `zstd::Encoder` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | use zstd::Encoder; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `u8_size` [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:3:62 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::{field_item_size, field_type, u32_size, u64_size, u8_size, FieldType, Fields}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::ops::IndexMut` [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::ops::IndexMut; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Read` [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:14:15 [INFO] [stdout] | [INFO] [stdout] 14 | use std::io::{Read, Write}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `gzip` should have an upper camel case name [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:72:5 [INFO] [stdout] | [INFO] [stdout] 72 | gzip, [INFO] [stdout] | ^^^^ help: convert the identifier to upper camel case: `Gzip` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `lz4` should have an upper camel case name [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:73:5 [INFO] [stdout] | [INFO] [stdout] 73 | lz4, [INFO] [stdout] | ^^^ help: convert the identifier to upper camel case: `Lz4` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `Field_Meta_Map` should have an upper camel case name [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:118:12 [INFO] [stdout] | [INFO] [stdout] 118 | pub struct Field_Meta_Map(HashMap); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to upper camel case: `FieldMetaMap` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BlockMeta` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:1:19 [INFO] [stdout] | [INFO] [stdout] 1 | use super::meta::{BlockMeta, FileInfo, FileMeta, FILE_INFO_SIZE}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bit_vec::BitVec` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use bit_vec::BitVec; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `WriteBytesExt` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:6:45 [INFO] [stdout] | [INFO] [stdout] 6 | use byteorder::{LittleEndian, ReadBytesExt, WriteBytesExt}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `prelude::*`, `self` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:395:23 [INFO] [stdout] | [INFO] [stdout] 395 | use std::io::{self, prelude::*, BufReader}; [INFO] [stdout] | ^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `u64_size`, `u8_size` [INFO] [stdout] --> gbam_tools/src/single_thread/writer.rs:4:42 [INFO] [stdout] | [INFO] [stdout] 4 | field_type, is_data_field, u32_size, u64_size, u8_size, var_size_field_to_index, FieldType, [INFO] [stdout] | ^^^^^^^^ ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `flate2::write::ZlibEncoder` [INFO] [stdout] --> gbam_tools/src/writer.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use flate2::write::ZlibEncoder; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `zstd::stream::Encoder` [INFO] [stdout] --> gbam_tools/src/writer.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use zstd::stream::Encoder; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> gbam_tools/src/lib.rs:72:13 [INFO] [stdout] | [INFO] [stdout] 72 | /// Data fields [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] 73 | RefID, [INFO] [stdout] | ----- rustdoc does not generate documentation for expressions [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> gbam_tools/src/lib.rs:85:13 [INFO] [stdout] | [INFO] [stdout] 85 | /// Index fields [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] 86 | LName, [INFO] [stdout] | ----- rustdoc does not generate documentation for expressions [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `wrap_pymodule` [INFO] [stdout] --> gbam_tools/src/lib.rs:324:29 [INFO] [stdout] | [INFO] [stdout] 324 | use pyo3::{wrap_pyfunction, wrap_pymodule}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ByteOrder` [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:3:17 [INFO] [stdout] | [INFO] [stdout] 3 | use byteorder::{ByteOrder, LittleEndian, ReadBytesExt}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SerializeSeq` [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:5:32 [INFO] [stdout] | [INFO] [stdout] 5 | use serde::ser::{SerializeMap, SerializeSeq, Serializer}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> gbam_tools/src/lib.rs:128:9 [INFO] [stdout] | [INFO] [stdout] 128 | _ => panic!("This field is not supported: {} \n", field.to_string()), [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> gbam_tools/src/lib.rs:173:9 [INFO] [stdout] | [INFO] [stdout] 173 | _ => panic!("Unreachable"), [INFO] [stdout] | ^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `cur_val` is assigned to, but never used [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:26:13 [INFO] [stdout] | [INFO] [stdout] 26 | let mut cur_val: usize = 0; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] = note: consider using `_cur_val` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `col` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:97:13 [INFO] [stdout] | [INFO] [stdout] 97 | for col in self.columns.iter() { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_col` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `level` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:246:45 [INFO] [stdout] | [INFO] [stdout] 246 | Compression::FLATE2(level) => { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_level` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:35:13 [INFO] [stdout] | [INFO] [stdout] 35 | fn from(mut bytes: &[u8]) -> Self { [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ByteOrder` [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:3:17 [INFO] [stdout] | [INFO] [stdout] 3 | use byteorder::{ByteOrder, LittleEndian, ReadBytesExt}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SerializeSeq` [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:5:32 [INFO] [stdout] | [INFO] [stdout] 5 | use serde::ser::{SerializeMap, SerializeSeq, Serializer}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> gbam_tools/src/lib.rs:128:9 [INFO] [stdout] | [INFO] [stdout] 128 | _ => panic!("This field is not supported: {} \n", field.to_string()), [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> gbam_tools/src/lib.rs:173:9 [INFO] [stdout] | [INFO] [stdout] 173 | _ => panic!("Unreachable"), [INFO] [stdout] | ^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `cur_val` is assigned to, but never used [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:26:13 [INFO] [stdout] | [INFO] [stdout] 26 | let mut cur_val: usize = 0; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] = note: consider using `_cur_val` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `col` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:97:13 [INFO] [stdout] | [INFO] [stdout] 97 | for col in self.columns.iter() { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_col` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `level` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:246:45 [INFO] [stdout] | [INFO] [stdout] 246 | Compression::FLATE2(level) => { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_level` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:123:13 [INFO] [stdout] | [INFO] [stdout] 123 | for mut col in RowGroup.columns.iter_mut() { [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:35:13 [INFO] [stdout] | [INFO] [stdout] 35 | fn from(mut bytes: &[u8]) -> Self { [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `write_record` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:24:12 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn write_record(&mut self, rec: &RawRecord) -> std::io::Result<()> { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `compression_policy` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:62:12 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn compression_policy(&mut self, compression_types: Vec) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `payload_size_of` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:84:12 [INFO] [stdout] | [INFO] [stdout] 84 | pub fn payload_size_of(&self) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `size_of` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:95:12 [INFO] [stdout] | [INFO] [stdout] 95 | pub fn size_of(&self) -> usize { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `CompressionTask` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:146:8 [INFO] [stdout] | [INFO] [stdout] 146 | struct CompressionTask { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:191:12 [INFO] [stdout] | [INFO] [stdout] 191 | pub fn new( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `file_info` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:107:5 [INFO] [stdout] | [INFO] [stdout] 107 | file_info: FileInfo, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `is_last_in_block` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:298:8 [INFO] [stdout] | [INFO] [stdout] 298 | fn is_last_in_block(&self, rec_num: u64, field: &Fields) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_variable_field_bytes` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:326:8 [INFO] [stdout] | [INFO] [stdout] 326 | fn get_variable_field_bytes(&self, field: &Fields, rec_num_in_block: u64) -> &[u8] { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static is never used: `GBAM_MAGIC` [INFO] [stdout] --> gbam_tools/src/single_thread/writer.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | static GBAM_MAGIC: &[u8] = b"geeBAM10"; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static is never used: `num` [INFO] [stdout] --> gbam_tools/src/single_thread/writer.rs:31:1 [INFO] [stdout] | [INFO] [stdout] 31 | static mut num: u32 = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `cur_block_offset` [INFO] [stdout] --> gbam_tools/src/writer.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | cur_block_offset: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> gbam_tools/src/writer.rs:34:12 [INFO] [stdout] | [INFO] [stdout] 34 | pub fn new( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `write_record` [INFO] [stdout] --> gbam_tools/src/writer.rs:78:12 [INFO] [stdout] | [INFO] [stdout] 78 | pub fn write_record(&mut self, rec: &RawRecord) -> io::Result<()> { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> gbam_tools/src/writer.rs:152:12 [INFO] [stdout] | [INFO] [stdout] 152 | pub fn new( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:53:30 [INFO] [stdout] | [INFO] [stdout] 53 | Err(e) => panic!(e), [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panic)]` on by default [INFO] [stdout] = note: this is no longer accepted in Rust 2021 [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 53 | Err(e) => panic!("{}", e), [INFO] [stdout] | ^^^^^ [INFO] [stdout] help: or use std::panic::panic_any instead [INFO] [stdout] | [INFO] [stdout] 53 | Err(e) => std::panic::panic_any(e), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:62:38 [INFO] [stdout] | [INFO] [stdout] 62 | for val in self.gbam_version.into_iter() { [INFO] [stdout] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(array_into_iter)]` on by default [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #66145 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `u64_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:33:7 [INFO] [stdout] | [INFO] [stdout] 33 | const u64_size: usize = mem::size_of::(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to upper case: `U64_SIZE` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `u32_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:34:7 [INFO] [stdout] | [INFO] [stdout] 34 | const u32_size: usize = mem::size_of::(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to upper case: `U32_SIZE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `u16_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:35:7 [INFO] [stdout] | [INFO] [stdout] 35 | const u16_size: usize = mem::size_of::(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to upper case: `U16_SIZE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `u8_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:36:7 [INFO] [stdout] | [INFO] [stdout] 36 | const u8_size: usize = mem::size_of::(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper case: `U8_SIZE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `mega_byte_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:37:7 [INFO] [stdout] | [INFO] [stdout] 37 | const mega_byte_size: usize = 1_048_576; [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to upper case: `MEGA_BYTE_SIZE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:58:13 [INFO] [stdout] | [INFO] [stdout] 58 | writer.finish(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | res.write(&GBAM_MAGIC[..]); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:63:13 [INFO] [stdout] | [INFO] [stdout] 63 | res.write_u32::(*val); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `next_refID` should have a snake case name [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | pub next_refID: Option, [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `next_ref_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `num` should have an upper case name [INFO] [stdout] --> gbam_tools/src/single_thread/writer.rs:31:12 [INFO] [stdout] | [INFO] [stdout] 31 | static mut num: u32 = 0; [INFO] [stdout] | ^^^ help: convert the identifier to upper case: `NUM` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `compression_policy` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:62:12 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn compression_policy(&mut self, compression_types: Vec) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `size_of` [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:95:12 [INFO] [stdout] | [INFO] [stdout] 95 | pub fn size_of(&self) -> usize { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `file_info` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:107:5 [INFO] [stdout] | [INFO] [stdout] 107 | file_info: FileInfo, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `is_last_in_block` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:298:8 [INFO] [stdout] | [INFO] [stdout] 298 | fn is_last_in_block(&self, rec_num: u64, field: &Fields) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `get_variable_field_bytes` [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:326:8 [INFO] [stdout] | [INFO] [stdout] 326 | fn get_variable_field_bytes(&self, field: &Fields, rec_num_in_block: u64) -> &[u8] { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static is never used: `GBAM_MAGIC` [INFO] [stdout] --> gbam_tools/src/single_thread/writer.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | static GBAM_MAGIC: &[u8] = b"geeBAM10"; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static is never used: `num` [INFO] [stdout] --> gbam_tools/src/single_thread/writer.rs:31:1 [INFO] [stdout] | [INFO] [stdout] 31 | static mut num: u32 = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `cur_block_offset` [INFO] [stdout] --> gbam_tools/src/writer.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | cur_block_offset: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:53:30 [INFO] [stdout] | [INFO] [stdout] 53 | Err(e) => panic!(e), [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panic)]` on by default [INFO] [stdout] = note: this is no longer accepted in Rust 2021 [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 53 | Err(e) => panic!("{}", e), [INFO] [stdout] | ^^^^^ [INFO] [stdout] help: or use std::panic::panic_any instead [INFO] [stdout] | [INFO] [stdout] 53 | Err(e) => std::panic::panic_any(e), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:62:38 [INFO] [stdout] | [INFO] [stdout] 62 | for val in self.gbam_version.into_iter() { [INFO] [stdout] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(array_into_iter)]` on by default [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #66145 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 56 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `u64_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:33:7 [INFO] [stdout] | [INFO] [stdout] 33 | const u64_size: usize = mem::size_of::(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to upper case: `U64_SIZE` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `u32_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:34:7 [INFO] [stdout] | [INFO] [stdout] 34 | const u32_size: usize = mem::size_of::(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to upper case: `U32_SIZE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `u16_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:35:7 [INFO] [stdout] | [INFO] [stdout] 35 | const u16_size: usize = mem::size_of::(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to upper case: `U16_SIZE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `u8_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:36:7 [INFO] [stdout] | [INFO] [stdout] 36 | const u8_size: usize = mem::size_of::(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper case: `U8_SIZE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `mega_byte_size` should have an upper case name [INFO] [stdout] --> gbam_tools/src/lib.rs:37:7 [INFO] [stdout] | [INFO] [stdout] 37 | const mega_byte_size: usize = 1_048_576; [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to upper case: `MEGA_BYTE_SIZE` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking gbam_binary v0.1.0 (/opt/rustwide/workdir/gbam_binary) [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> gbam_tools/src/bam_to_gbam.rs:58:13 [INFO] [stdout] | [INFO] [stdout] 58 | writer.finish(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `RowGroup` should have a snake case name [INFO] [stdout] --> gbam_tools/src/rowgroup.rs:119:17 [INFO] [stdout] | [INFO] [stdout] 119 | let mut RowGroup = RowGroup::default(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `row_group` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | res.write(&GBAM_MAGIC[..]); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> gbam_tools/src/single_thread/meta.rs:63:13 [INFO] [stdout] | [INFO] [stdout] 63 | res.write_u32::(*val); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `next_refID` should have a snake case name [INFO] [stdout] --> gbam_tools/src/single_thread/reader.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | pub next_refID: Option, [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `next_ref_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `num` should have an upper case name [INFO] [stdout] --> gbam_tools/src/single_thread/writer.rs:31:12 [INFO] [stdout] | [INFO] [stdout] 31 | static mut num: u32 = 0; [INFO] [stdout] | ^^^ help: convert the identifier to upper case: `NUM` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> gbam_tools/src/writer.rs:227:13 [INFO] [stdout] | [INFO] [stdout] 227 | writer.write_record(&records[0]); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 52 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `in_path` [INFO] [stdout] --> gbam_binary/src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | in_path: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `in_path` [INFO] [stdout] --> gbam_binary/src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | in_path: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 37s [INFO] running `Command { std: "docker" "inspect" "981554e2f7c433c8958734bb4f2383d76869342fe9e4d820c3b89c0f814fc77e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "981554e2f7c433c8958734bb4f2383d76869342fe9e4d820c3b89c0f814fc77e", kill_on_drop: false }` [INFO] [stdout] 981554e2f7c433c8958734bb4f2383d76869342fe9e4d820c3b89c0f814fc77e