[INFO] cloning repository https://github.com/HopedWall/rs-vgaligner [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HopedWall/rs-vgaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 3c70859b644bffa75239d4520cc7a7badfab9daf [INFO] checking HopedWall/rs-vgaligner against master#a5f164faad4a2fed606b8160fd7ecd2d5cbba381 for pr-84920 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner" "/workspace/builds/worker-14/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/HopedWall/rs-vgaligner on toolchain a5f164faad4a2fed606b8160fd7ecd2d5cbba381 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/HopedWall/rs-vgaligner [INFO] finished tweaking git repo https://github.com/HopedWall/rs-vgaligner [INFO] tweaked toml for git repo https://github.com/HopedWall/rs-vgaligner written to /workspace/builds/worker-14/source/Cargo.toml [INFO] crate git repo https://github.com/HopedWall/rs-vgaligner already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 10721db3fa6ccac2a25d633795bead414d204dab2a1a5a800a8001d615f50ace [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "10721db3fa6ccac2a25d633795bead414d204dab2a1a5a800a8001d615f50ace", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "10721db3fa6ccac2a25d633795bead414d204dab2a1a5a800a8001d615f50ace", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "10721db3fa6ccac2a25d633795bead414d204dab2a1a5a800a8001d615f50ace", kill_on_drop: false }` [INFO] [stdout] 10721db3fa6ccac2a25d633795bead414d204dab2a1a5a800a8001d615f50ace [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+a5f164faad4a2fed606b8160fd7ecd2d5cbba381" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a07b51d22ecb9293e57454ea76725fd2aa11a70c3a9941e207e8436833476f69 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a07b51d22ecb9293e57454ea76725fd2aa11a70c3a9941e207e8436833476f69", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Compiling serde_derive v1.0.125 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Checking once_cell v1.7.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking arrayvec v0.5.2 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling rustversion v1.0.4 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking rand_core v0.6.2 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking newtype_derive v0.1.4 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking bitvector v0.1.5 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking thread_local v1.1.3 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking wyhash v0.5.0 [INFO] [stderr] Checking log v0.4.14 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling ahash v0.7.2 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.3 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling substring v1.4.5 [INFO] [stderr] Checking lexical-core v0.7.5 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking getrandom v0.2.2 [INFO] [stderr] Checking crossbeam-epoch v0.9.3 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking regex v1.4.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Compiling darling_core v0.12.4 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling bytemuck_derive v1.0.1 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling darling_macro v0.12.4 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking bytemuck v1.5.1 [INFO] [stderr] Compiling darling v0.12.4 [INFO] [stderr] Compiling serde_with_macros v1.4.1 [INFO] [stderr] Checking bio-types v0.10.0 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Checking serde v1.0.125 [INFO] [stderr] Checking bstr v0.2.15 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking serde_json v1.0.64 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking boomphf v0.5.9 [INFO] [stderr] Checking serde_with v1.8.1 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.5 [INFO] [stderr] Checking gfa v0.8.0 [INFO] [stderr] Checking handlegraph v0.5.0 [INFO] [stderr] Checking vgaligner v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `kmer_length` [INFO] [stdout] --> src/index.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 16 | kmer_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_length` [INFO] [stdout] --> src/index.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | seq_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_fwd` [INFO] [stdout] --> src/index.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 22 | seq_fwd: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_rev` [INFO] [stdout] --> src/index.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | seq_rev: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_bv` [INFO] [stdout] --> src/index.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | seq_bv: BitVec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_edges` [INFO] [stdout] --> src/index.rs:30:5 [INFO] [stdout] | [INFO] [stdout] 30 | n_edges: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `edges` [INFO] [stdout] --> src/index.rs:32:5 [INFO] [stdout] | [INFO] [stdout] 32 | edges: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_nodes` [INFO] [stdout] --> src/index.rs:34:5 [INFO] [stdout] | [INFO] [stdout] 34 | n_nodes: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `node_ref` [INFO] [stdout] --> src/index.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | node_ref: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_kmers` [INFO] [stdout] --> src/index.rs:38:5 [INFO] [stdout] | [INFO] [stdout] 38 | n_kmers: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmers_on_graph` [INFO] [stdout] --> src/index.rs:46:5 [INFO] [stdout] | [INFO] [stdout] 46 | kmers_on_graph : Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_pos_table` [INFO] [stdout] --> src/index.rs:48:5 [INFO] [stdout] | [INFO] [stdout] 48 | kmer_pos_table: NoKeyBoomHashMap, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `loaded` [INFO] [stdout] --> src/index.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 50 | loaded: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 13 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_length` [INFO] [stdout] --> src/index.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 16 | kmer_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_length` [INFO] [stdout] --> src/index.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | seq_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_fwd` [INFO] [stdout] --> src/index.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 22 | seq_fwd: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_rev` [INFO] [stdout] --> src/index.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | seq_rev: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_bv` [INFO] [stdout] --> src/index.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | seq_bv: BitVec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_edges` [INFO] [stdout] --> src/index.rs:30:5 [INFO] [stdout] | [INFO] [stdout] 30 | n_edges: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `edges` [INFO] [stdout] --> src/index.rs:32:5 [INFO] [stdout] | [INFO] [stdout] 32 | edges: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_nodes` [INFO] [stdout] --> src/index.rs:34:5 [INFO] [stdout] | [INFO] [stdout] 34 | n_nodes: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `node_ref` [INFO] [stdout] --> src/index.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | node_ref: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_kmers` [INFO] [stdout] --> src/index.rs:38:5 [INFO] [stdout] | [INFO] [stdout] 38 | n_kmers: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmers_on_graph` [INFO] [stdout] --> src/index.rs:46:5 [INFO] [stdout] | [INFO] [stdout] 46 | kmers_on_graph : Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_pos_table` [INFO] [stdout] --> src/index.rs:48:5 [INFO] [stdout] | [INFO] [stdout] 48 | kmer_pos_table: NoKeyBoomHashMap, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `loaded` [INFO] [stdout] --> src/index.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 50 | loaded: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 13 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 04s [INFO] running `Command { std: "docker" "inspect" "a07b51d22ecb9293e57454ea76725fd2aa11a70c3a9941e207e8436833476f69", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a07b51d22ecb9293e57454ea76725fd2aa11a70c3a9941e207e8436833476f69", kill_on_drop: false }` [INFO] [stdout] a07b51d22ecb9293e57454ea76725fd2aa11a70c3a9941e207e8436833476f69