[INFO] fetching crate hdf5-sys 0.7.1... [INFO] checking hdf5-sys-0.7.1 against try#b0d0ea232bdae12fa8da8491a91ae1db029990ef for pr-84037 [INFO] extracting crate hdf5-sys 0.7.1 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate hdf5-sys 0.7.1 on toolchain b0d0ea232bdae12fa8da8491a91ae1db029990ef [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b0d0ea232bdae12fa8da8491a91ae1db029990ef" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5-sys 0.7.1 [INFO] finished tweaking crates.io crate hdf5-sys 0.7.1 [INFO] tweaked toml for crates.io crate hdf5-sys 0.7.1 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b0d0ea232bdae12fa8da8491a91ae1db029990ef" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b0d0ea232bdae12fa8da8491a91ae1db029990ef" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded clang-sys v0.21.2 [INFO] [stderr] Downloaded bindgen v0.31.3 [INFO] [stderr] Downloaded build-probe-mpi v0.1.1 [INFO] [stderr] Downloaded mpi-sys v0.1.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b0d0ea232bdae12fa8da8491a91ae1db029990ef" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e353b7714427d280b3d6a9279c089536dde0516cafe3ffa21b242d2ed4b9af95 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e353b7714427d280b3d6a9279c089536dde0516cafe3ffa21b242d2ed4b9af95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e353b7714427d280b3d6a9279c089536dde0516cafe3ffa21b242d2ed4b9af95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e353b7714427d280b3d6a9279c089536dde0516cafe3ffa21b242d2ed4b9af95", kill_on_drop: false }` [INFO] [stdout] e353b7714427d280b3d6a9279c089536dde0516cafe3ffa21b242d2ed4b9af95 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+b0d0ea232bdae12fa8da8491a91ae1db029990ef" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 00d367026899a4eab0bc3fa16c82a6d10c353d01fa36a4548014bf0e27e9498d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "00d367026899a4eab0bc3fa16c82a6d10c353d01fa36a4548014bf0e27e9498d", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling regex v1.4.6 [INFO] [stderr] Compiling hdf5-sys v0.7.1 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-3cc8a77e911906d5/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e9addfbe40 - std::backtrace_rs::backtrace::libunwind::trace::h247d9dc800afe0ad [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55e9addfbe40 - std::backtrace_rs::backtrace::trace_unsynchronized::h9a4153306adf486c [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55e9addfbe40 - std::sys_common::backtrace::_print_fmt::h1ac8daa5000ee24c [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55e9addfbe40 - ::fmt::h22a8e55d2cc5363a [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55e9ade1a88f - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x55e9addf9175 - std::io::Write::write_fmt::h441a47830651073b [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/io/mod.rs:1580:15 [INFO] [stderr] 6: 0x55e9addfddbb - std::sys_common::backtrace::_print::hd1e0ee1c195f9f05 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55e9addfddbb - std::sys_common::backtrace::print::h7d1098def5c25d20 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55e9addfddbb - std::panicking::default_hook::{{closure}}::h484b8b15967e42c8 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55e9addfd89d - std::panicking::default_hook::h82c79ca49716b79d [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55e9addfe36d - std::panicking::rust_panic_with_hook::h6df253a3c973d6b6 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55e9add45253 - std::panicking::begin_panic::{{closure}}::h5debbef11fecdb8b [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55e9add624a9 - std::sys_common::backtrace::__rust_end_short_backtrace::h1352e0f12bf0cf3d [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55e9add45189 - std::panicking::begin_panic::hce259572fc822e87 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55e9adbffda9 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hab647f8fe61c912c [INFO] [stderr] at /opt/rustwide/workdir/build.rs:549:13 [INFO] [stderr] 15: 0x55e9adc015bc - build_script_build::main::hedfe0c86dd2d05cd [INFO] [stderr] at /opt/rustwide/workdir/build.rs:647:9 [INFO] [stderr] 16: 0x55e9adc0a67b - core::ops::function::FnOnce::call_once::h30074437e1decb97 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55e9adc0dbae - std::sys_common::backtrace::__rust_begin_short_backtrace::hf6d0a0a95f508b28 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55e9adc0a521 - std::rt::lang_start::{{closure}}::hcdc71c8915113ce7 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55e9addfe76a - core::ops::function::impls:: for &F>::call_once::h98fbc5823393ca6f [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55e9addfe76a - std::panicking::try::do_call::h210d0709dd1d5fd6 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55e9addfe76a - std::panicking::try::hc60c2c01c5cf7473 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55e9addfe76a - std::panic::catch_unwind::h7480a56877b30ca9 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x55e9addfe76a - std::rt::lang_start_internal::he77194431b0ee4a2 [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55e9adc0a500 - std::rt::lang_start::h7097580705b9782b [INFO] [stderr] at /rustc/b0d0ea232bdae12fa8da8491a91ae1db029990ef/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55e9adc02abc - main [INFO] [stderr] 26: 0x7fd64c8d40b3 - __libc_start_main [INFO] [stderr] 27: 0x55e9adbfac8e - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "00d367026899a4eab0bc3fa16c82a6d10c353d01fa36a4548014bf0e27e9498d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "00d367026899a4eab0bc3fa16c82a6d10c353d01fa36a4548014bf0e27e9498d", kill_on_drop: false }` [INFO] [stdout] 00d367026899a4eab0bc3fa16c82a6d10c353d01fa36a4548014bf0e27e9498d