[INFO] fetching crate neuro 0.1.0... [INFO] checking neuro-0.1.0 against master#a836d9b6413d9d593be6c09463ff8c4c70e56599 for pr-84037 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain a836d9b6413d9d593be6c09463ff8c4c70e56599 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a836d9b6413d9d593be6c09463ff8c4c70e56599" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a836d9b6413d9d593be6c09463ff8c4c70e56599" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+a836d9b6413d9d593be6c09463ff8c4c70e56599" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ffaadb6170b8f15f89bbebf60833a58e5bdf9d6de0f6cf5b241ef3114c5ba961 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ffaadb6170b8f15f89bbebf60833a58e5bdf9d6de0f6cf5b241ef3114c5ba961", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ffaadb6170b8f15f89bbebf60833a58e5bdf9d6de0f6cf5b241ef3114c5ba961", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ffaadb6170b8f15f89bbebf60833a58e5bdf9d6de0f6cf5b241ef3114c5ba961", kill_on_drop: false }` [INFO] [stdout] ffaadb6170b8f15f89bbebf60833a58e5bdf9d6de0f6cf5b241ef3114c5ba961 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+a836d9b6413d9d593be6c09463ff8c4c70e56599" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0ccb78109eb9b53b454f6d9c6d0c8ffc2809059c92c9d13dd059d1692b81f359 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0ccb78109eb9b53b454f6d9c6d0c8ffc2809059c92c9d13dd059d1692b81f359", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling regex-syntax v0.6.14 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking ascii v0.9.3 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Checking rand_jitter v0.1.4 [INFO] [stderr] Checking lock_api v0.2.0 [INFO] [stderr] Checking inflate v0.4.5 [INFO] [stderr] Checking miniz_oxide v0.3.6 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking gif v0.10.3 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking walkdir v2.3.1 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling memoffset v0.5.3 [INFO] [stderr] Compiling parking_lot_core v0.5.0 [INFO] [stderr] Compiling parking_lot v0.8.0 [INFO] [stderr] Compiling aho-corasick v0.7.9 [INFO] [stderr] Checking deflate v0.7.20 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking rand_pcg v0.1.2 [INFO] [stderr] Checking rand_chacha v0.1.1 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Checking crossbeam-epoch v0.8.2 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Checking rand v0.6.5 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rayon-core v1.7.0 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] Checking jpeg-decoder v0.1.18 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] Compiling serde_json v1.0.48 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Checking image v0.23.0 [INFO] [stderr] Compiling hdf5-derive v0.6.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-7d1fac570a636918/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55c5b31073c0 - std::backtrace_rs::backtrace::libunwind::trace::h247d9dc800afe0ad [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55c5b31073c0 - std::backtrace_rs::backtrace::trace_unsynchronized::h9a4153306adf486c [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55c5b31073c0 - std::sys_common::backtrace::_print_fmt::h1ac8daa5000ee24c [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55c5b31073c0 - ::fmt::h22a8e55d2cc5363a [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55c5b3125d1f - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x55c5b31046f5 - std::io::Write::write_fmt::h441a47830651073b [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/io/mod.rs:1580:15 [INFO] [stderr] 6: 0x55c5b310933b - std::sys_common::backtrace::_print::hd1e0ee1c195f9f05 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55c5b310933b - std::sys_common::backtrace::print::h7d1098def5c25d20 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55c5b310933b - std::panicking::default_hook::{{closure}}::h484b8b15967e42c8 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55c5b3108e1d - std::panicking::default_hook::h82c79ca49716b79d [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55c5b31098ed - std::panicking::rust_panic_with_hook::h6df253a3c973d6b6 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55c5b30516d3 - std::panicking::begin_panic::{{closure}}::h04d8dd19511ca529 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55c5b306f029 - std::sys_common::backtrace::__rust_end_short_backtrace::hbb14f68bf6f9dd9b [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55c5b3051609 - std::panicking::begin_panic::he9e231f21305d105 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55c5b2f05fc9 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h44fbf57bd50eaf2a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] 15: 0x55c5b2f0729b - build_script_build::main::hf3a386f66e9a1c1d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605:5 [INFO] [stderr] 16: 0x55c5b2f0b85b - core::ops::function::FnOnce::call_once::hadaa8802c80449e9 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55c5b2f08d3e - std::sys_common::backtrace::__rust_begin_short_backtrace::hd1d75a4c171dac6f [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55c5b2f0e191 - std::rt::lang_start::{{closure}}::h6e7c780731cd517b [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55c5b3109cea - core::ops::function::impls:: for &F>::call_once::h98fbc5823393ca6f [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55c5b3109cea - std::panicking::try::do_call::h210d0709dd1d5fd6 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55c5b3109cea - std::panicking::try::hc60c2c01c5cf7473 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55c5b3109cea - std::panic::catch_unwind::h7480a56877b30ca9 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x55c5b3109cea - std::rt::lang_start_internal::he77194431b0ee4a2 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55c5b2f0e170 - std::rt::lang_start::h99771029ede90ba5 [INFO] [stderr] at /rustc/a836d9b6413d9d593be6c09463ff8c4c70e56599/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55c5b2f07c8c - main [INFO] [stderr] 26: 0x7f35bc5db0b3 - __libc_start_main [INFO] [stderr] 27: 0x55c5b2f01c9e - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "0ccb78109eb9b53b454f6d9c6d0c8ffc2809059c92c9d13dd059d1692b81f359", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0ccb78109eb9b53b454f6d9c6d0c8ffc2809059c92c9d13dd059d1692b81f359", kill_on_drop: false }` [INFO] [stdout] 0ccb78109eb9b53b454f6d9c6d0c8ffc2809059c92c9d13dd059d1692b81f359