[INFO] cloning repository https://github.com/HopedWall/rs-vgaligner [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HopedWall/rs-vgaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1d56549c43282001569ddd72deacfc24b13b8569 [INFO] checking HopedWall/rs-vgaligner against master#a836d9b6413d9d593be6c09463ff8c4c70e56599 for pr-84037 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner" "/workspace/builds/worker-1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/HopedWall/rs-vgaligner on toolchain a836d9b6413d9d593be6c09463ff8c4c70e56599 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a836d9b6413d9d593be6c09463ff8c4c70e56599" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/HopedWall/rs-vgaligner [INFO] finished tweaking git repo https://github.com/HopedWall/rs-vgaligner [INFO] tweaked toml for git repo https://github.com/HopedWall/rs-vgaligner written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate git repo https://github.com/HopedWall/rs-vgaligner already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a836d9b6413d9d593be6c09463ff8c4c70e56599" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+a836d9b6413d9d593be6c09463ff8c4c70e56599" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 69d9eb4f0a593771dfed5cab258707391fdf6b89943c33a1d9f92e7676faef81 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "69d9eb4f0a593771dfed5cab258707391fdf6b89943c33a1d9f92e7676faef81", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "69d9eb4f0a593771dfed5cab258707391fdf6b89943c33a1d9f92e7676faef81", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "69d9eb4f0a593771dfed5cab258707391fdf6b89943c33a1d9f92e7676faef81", kill_on_drop: false }` [INFO] [stdout] 69d9eb4f0a593771dfed5cab258707391fdf6b89943c33a1d9f92e7676faef81 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+a836d9b6413d9d593be6c09463ff8c4c70e56599" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d41efa2cf44a047bb4910cb71f181f23aca75b8efdb6b246864376d480a05613 [INFO] running `Command { std: "docker" "start" "-a" "d41efa2cf44a047bb4910cb71f181f23aca75b8efdb6b246864376d480a05613", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Compiling serde_derive v1.0.125 [INFO] [stderr] Compiling serde v1.0.125 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Checking byteorder v1.4.2 [INFO] [stderr] Checking once_cell v1.7.0 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling lexical-core v0.7.5 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling rustversion v1.0.4 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking newtype_derive v0.1.4 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking rand_core v0.6.2 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking bitvector v0.1.5 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling ahash v0.7.2 [INFO] [stderr] Checking thread_local v1.1.3 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.3 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling substring v1.4.5 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking wyhash v0.5.0 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking getrandom v0.2.2 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking crossbeam-epoch v0.9.3 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v1.4.3 [INFO] [stderr] Checking ndarray v0.13.1 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Compiling darling_core v0.12.4 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling bytemuck_derive v1.0.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling darling_macro v0.12.4 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking bytemuck v1.5.1 [INFO] [stderr] Compiling darling v0.12.4 [INFO] [stderr] Compiling serde_with_macros v1.4.1 [INFO] [stderr] Checking bio-types v0.10.0 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Checking bstr v0.2.15 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking boomphf v0.5.9 [INFO] [stderr] Checking serde_with v1.8.1 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.5 [INFO] [stderr] Checking gfa v0.8.0 [INFO] [stderr] Checking handlegraph v0.5.0 [INFO] [stderr] Checking vgaligner v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `ahash::AHashMap` [INFO] [stdout] --> src/kmer.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use ahash::AHashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserializer`, `Serializer` [INFO] [stdout] --> src/serialization.rs:5:26 [INFO] [stdout] | [INFO] [stdout] 5 | use serde::{Deserialize, Deserializer, Serialize, Serializer}; [INFO] [stdout] | ^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ahash::AHashMap` [INFO] [stdout] --> src/kmer.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use ahash::AHashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserializer`, `Serializer` [INFO] [stdout] --> src/serialization.rs:5:26 [INFO] [stdout] | [INFO] [stdout] 5 | use serde::{Deserialize, Deserializer, Serialize, Serializer}; [INFO] [stdout] | ^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `kmers` is never read [INFO] [stdout] --> src/kmer.rs:241:13 [INFO] [stdout] | [INFO] [stdout] 241 | let mut kmers: Vec = Vec::new(); [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `kmers` is never read [INFO] [stdout] --> src/kmer.rs:241:13 [INFO] [stdout] | [INFO] [stdout] 241 | let mut kmers: Vec = Vec::new(); [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_length` [INFO] [stdout] --> src/index.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | kmer_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_length` [INFO] [stdout] --> src/index.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | seq_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_fwd` [INFO] [stdout] --> src/index.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | seq_fwd: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_rev` [INFO] [stdout] --> src/index.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | seq_rev: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_bv` [INFO] [stdout] --> src/index.rs:30:5 [INFO] [stdout] | [INFO] [stdout] 30 | seq_bv: BitVec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_edges` [INFO] [stdout] --> src/index.rs:34:5 [INFO] [stdout] | [INFO] [stdout] 34 | n_edges: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `edges` [INFO] [stdout] --> src/index.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | edges: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_nodes` [INFO] [stdout] --> src/index.rs:38:5 [INFO] [stdout] | [INFO] [stdout] 38 | n_nodes: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `node_ref` [INFO] [stdout] --> src/index.rs:40:5 [INFO] [stdout] | [INFO] [stdout] 40 | node_ref: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_kmers` [INFO] [stdout] --> src/index.rs:42:5 [INFO] [stdout] | [INFO] [stdout] 42 | n_kmers: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmers_on_graph` [INFO] [stdout] --> src/index.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 50 | kmers_on_graph : Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_pos_table` [INFO] [stdout] --> src/index.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 52 | kmer_pos_table: NoKeyBoomHashMap, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `loaded` [INFO] [stdout] --> src/index.rs:54:5 [INFO] [stdout] | [INFO] [stdout] 54 | loaded: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `generate_pos_on_forward` [INFO] [stdout] --> src/kmer.rs:504:4 [INFO] [stdout] | [INFO] [stdout] 504 | fn generate_pos_on_forward( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:87:9 [INFO] [stdout] | [INFO] [stdout] 87 | serialize_object_to_file(&seq_fwd, out_prefix.clone() + ".sqf"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:88:9 [INFO] [stdout] | [INFO] [stdout] 88 | serialize_object_to_file(&seq_rev, out_prefix.clone() + ".sqr"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:89:9 [INFO] [stdout] | [INFO] [stdout] 89 | serialize_object_to_file(&node_ref, out_prefix.clone() + ".gyn"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:90:9 [INFO] [stdout] | [INFO] [stdout] 90 | serialize_object_to_file(&seq_bv, out_prefix.clone() + ".sbv"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:121:9 [INFO] [stdout] | [INFO] [stdout] 121 | serialize_object_to_file(&kmers_on_graph, out_prefix.clone() + ".kgph"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:122:9 [INFO] [stdout] | [INFO] [stdout] 122 | serialize_object_to_file(&kmers_positions_on_ref, out_prefix.clone() + ".kpos"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:133:9 [INFO] [stdout] | [INFO] [stdout] 133 | serialize_object_to_file(&kmers_table, out_prefix.clone() + ".bbx"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | file.write_all(">ref\n".as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:37:5 [INFO] [stdout] | [INFO] [stdout] 37 | file.write_all(seq.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:46:9 [INFO] [stdout] | [INFO] [stdout] 46 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:47:9 [INFO] [stdout] | [INFO] [stdout] 47 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:62:9 [INFO] [stdout] | [INFO] [stdout] 62 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:68:9 [INFO] [stdout] | [INFO] [stdout] 68 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:69:9 [INFO] [stdout] | [INFO] [stdout] 69 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:81:5 [INFO] [stdout] | [INFO] [stdout] 81 | file.write_all(reference.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:92:13 [INFO] [stdout] | [INFO] [stdout] 92 | file.write_all(kmer_string.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:112:5 [INFO] [stdout] | [INFO] [stdout] 112 | file.write_all(reference.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:124:9 [INFO] [stdout] | [INFO] [stdout] 124 | file.write_all(kmer_string.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `fileName` should have a snake case name [INFO] [stdout] --> src/io.rs:128:55 [INFO] [stdout] | [INFO] [stdout] 128 | pub fn store_object_to_file(serialized_object: &[u8], fileName: &String) -> std::io::Result<()> { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `file_name` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `kmer_nodeId` should have a snake case name [INFO] [stdout] --> src/kmer.rs:515:13 [INFO] [stdout] | [INFO] [stdout] 515 | let kmer_nodeId = kmer_handle.unpack_number() - 1; [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `kmer_node_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `fileName` should have a snake case name [INFO] [stdout] --> src/serialization.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | fileName: String, [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `file_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_length` [INFO] [stdout] --> src/index.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | kmer_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_length` [INFO] [stdout] --> src/index.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | seq_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_fwd` [INFO] [stdout] --> src/index.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | seq_fwd: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_rev` [INFO] [stdout] --> src/index.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | seq_rev: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_bv` [INFO] [stdout] --> src/index.rs:30:5 [INFO] [stdout] | [INFO] [stdout] 30 | seq_bv: BitVec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_edges` [INFO] [stdout] --> src/index.rs:34:5 [INFO] [stdout] | [INFO] [stdout] 34 | n_edges: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `edges` [INFO] [stdout] --> src/index.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | edges: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_nodes` [INFO] [stdout] --> src/index.rs:38:5 [INFO] [stdout] | [INFO] [stdout] 38 | n_nodes: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `node_ref` [INFO] [stdout] --> src/index.rs:40:5 [INFO] [stdout] | [INFO] [stdout] 40 | node_ref: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_kmers` [INFO] [stdout] --> src/index.rs:42:5 [INFO] [stdout] | [INFO] [stdout] 42 | n_kmers: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmers_on_graph` [INFO] [stdout] --> src/index.rs:50:5 [INFO] [stdout] | [INFO] [stdout] 50 | kmers_on_graph : Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_pos_table` [INFO] [stdout] --> src/index.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 52 | kmer_pos_table: NoKeyBoomHashMap, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `loaded` [INFO] [stdout] --> src/index.rs:54:5 [INFO] [stdout] | [INFO] [stdout] 54 | loaded: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `generate_pos_on_forward` [INFO] [stdout] --> src/kmer.rs:504:4 [INFO] [stdout] | [INFO] [stdout] 504 | fn generate_pos_on_forward( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 39 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:87:9 [INFO] [stdout] | [INFO] [stdout] 87 | serialize_object_to_file(&seq_fwd, out_prefix.clone() + ".sqf"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:88:9 [INFO] [stdout] | [INFO] [stdout] 88 | serialize_object_to_file(&seq_rev, out_prefix.clone() + ".sqr"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:89:9 [INFO] [stdout] | [INFO] [stdout] 89 | serialize_object_to_file(&node_ref, out_prefix.clone() + ".gyn"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:90:9 [INFO] [stdout] | [INFO] [stdout] 90 | serialize_object_to_file(&seq_bv, out_prefix.clone() + ".sbv"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:121:9 [INFO] [stdout] | [INFO] [stdout] 121 | serialize_object_to_file(&kmers_on_graph, out_prefix.clone() + ".kgph"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:122:9 [INFO] [stdout] | [INFO] [stdout] 122 | serialize_object_to_file(&kmers_positions_on_ref, out_prefix.clone() + ".kpos"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/index.rs:133:9 [INFO] [stdout] | [INFO] [stdout] 133 | serialize_object_to_file(&kmers_table, out_prefix.clone() + ".bbx"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | file.write_all(">ref\n".as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:37:5 [INFO] [stdout] | [INFO] [stdout] 37 | file.write_all(seq.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:46:9 [INFO] [stdout] | [INFO] [stdout] 46 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:47:9 [INFO] [stdout] | [INFO] [stdout] 47 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:62:9 [INFO] [stdout] | [INFO] [stdout] 62 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:68:9 [INFO] [stdout] | [INFO] [stdout] 68 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:69:9 [INFO] [stdout] | [INFO] [stdout] 69 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:81:5 [INFO] [stdout] | [INFO] [stdout] 81 | file.write_all(reference.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:92:13 [INFO] [stdout] | [INFO] [stdout] 92 | file.write_all(kmer_string.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:112:5 [INFO] [stdout] | [INFO] [stdout] 112 | file.write_all(reference.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:124:9 [INFO] [stdout] | [INFO] [stdout] 124 | file.write_all(kmer_string.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `fileName` should have a snake case name [INFO] [stdout] --> src/io.rs:128:55 [INFO] [stdout] | [INFO] [stdout] 128 | pub fn store_object_to_file(serialized_object: &[u8], fileName: &String) -> std::io::Result<()> { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `file_name` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `kmer_nodeId` should have a snake case name [INFO] [stdout] --> src/kmer.rs:515:13 [INFO] [stdout] | [INFO] [stdout] 515 | let kmer_nodeId = kmer_handle.unpack_number() - 1; [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `kmer_node_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `fileName` should have a snake case name [INFO] [stdout] --> src/serialization.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | fileName: String, [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `file_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 39 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 15s [INFO] running `Command { std: "docker" "inspect" "d41efa2cf44a047bb4910cb71f181f23aca75b8efdb6b246864376d480a05613", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d41efa2cf44a047bb4910cb71f181f23aca75b8efdb6b246864376d480a05613", kill_on_drop: false }` [INFO] [stdout] d41efa2cf44a047bb4910cb71f181f23aca75b8efdb6b246864376d480a05613