[INFO] cloning repository https://github.com/0ncorhynchus/pdbstat [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/0ncorhynchus/pdbstat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 4ad97d115b0b9b3e9628155b646db596a5063109 [INFO] checking 0ncorhynchus/pdbstat against master#01af5040fdada6ef8f1b749cda798d80a8590b2c for pr-84022 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat" "/workspace/builds/worker-6/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/0ncorhynchus/pdbstat on toolchain 01af5040fdada6ef8f1b749cda798d80a8590b2c [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+01af5040fdada6ef8f1b749cda798d80a8590b2c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] finished tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] tweaked toml for git repo https://github.com/0ncorhynchus/pdbstat written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/0ncorhynchus/pdbstat already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+01af5040fdada6ef8f1b749cda798d80a8590b2c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cmake v0.1.24 [INFO] [stderr] Downloaded gcc v0.3.51 [INFO] [stderr] Downloaded libc v0.2.24 [INFO] [stderr] Downloaded chemfiles v0.7.40 [INFO] [stderr] Downloaded chemfiles-sys v0.7.40 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d1cd00eb6e6ea2a7969240779edeaeff35b24be85036c63b883ba933028a15f" "/opt/rustwide/cargo-home/bin/cargo" "+01af5040fdada6ef8f1b749cda798d80a8590b2c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fe3471f92846b162d72f6dd1d453888172f29859cbbcc016cd37c3f4fa5900b2 [INFO] running `Command { std: "docker" "start" "-a" "fe3471f92846b162d72f6dd1d453888172f29859cbbcc016cd37c3f4fa5900b2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fe3471f92846b162d72f6dd1d453888172f29859cbbcc016cd37c3f4fa5900b2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fe3471f92846b162d72f6dd1d453888172f29859cbbcc016cd37c3f4fa5900b2", kill_on_drop: false }` [INFO] [stdout] fe3471f92846b162d72f6dd1d453888172f29859cbbcc016cd37c3f4fa5900b2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d1cd00eb6e6ea2a7969240779edeaeff35b24be85036c63b883ba933028a15f" "/opt/rustwide/cargo-home/bin/cargo" "+01af5040fdada6ef8f1b749cda798d80a8590b2c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 94403d09ea6f83babd210ddb9c434e7bfd9d6eb62d48619b174618a0a77de9a5 [INFO] running `Command { std: "docker" "start" "-a" "94403d09ea6f83babd210ddb9c434e7bfd9d6eb62d48619b174618a0a77de9a5", kill_on_drop: false }` [INFO] [stderr] Compiling gcc v0.3.51 [INFO] [stderr] Checking libc v0.2.24 [INFO] [stderr] Compiling cmake v0.1.24 [INFO] [stderr] Compiling chemfiles-sys v0.7.40 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.7.40` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-b200c329757a377f/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-78cf6513f9e332ae/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-78cf6513f9e332ae/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" "-j16" [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] Scanning dependencies of target tng_io_zlib [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target netcdf3-chemfiles [INFO] [stderr] Scanning dependencies of target chemfiles_files [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] [ 2%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/adler32.c.o [INFO] [stderr] [ 2%] Building CXX object chemfiles/CMakeFiles/chemfiles_files.dir/src/files/NcFile.cpp.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/liblib/nc_initialize.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/CMakeFiles/netcdf3-chemfiles.dir/netcdf/liblib/nc_initialize.c.o [INFO] [stderr] [ 4%] Building CXX object 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chemfiles/CMakeFiles/chemfiles.dir/src/formats/NcFormat.cpp.o [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning (dev) in CMakeLists.txt: [INFO] [stderr] No project() command is present. The top-level CMakeLists.txt file must [INFO] [stderr] contain a literal, direct call to the project() command. Add a line of [INFO] [stderr] code such as [INFO] [stderr] [INFO] [stderr] project(ProjectName) [INFO] [stderr] [INFO] [stderr] near the top of the file, but after cmake_minimum_required(). [INFO] [stderr] [INFO] [stderr] CMake is pretending there is a "project(Project)" command on the first [INFO] [stderr] line. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at chemfiles/CMakeLists.txt:8 (cmake_policy): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:245: chemfiles/CMakeFiles/chemfiles.dir/src/capi/frame.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:252: chemfiles/CMakeFiles/chemfiles.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5633e996e4a0 - std::backtrace_rs::backtrace::libunwind::trace::h0940e595a024cae9 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 1: 0x5633e996e4a0 - std::backtrace_rs::backtrace::trace_unsynchronized::h105f21b55a45a169 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5633e996e4a0 - std::sys_common::backtrace::_print_fmt::h3a2ed111c2bd9337 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x5633e996e4a0 - ::fmt::h9029dd42bc5e75b6 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x5633e998cfae - core::fmt::write::he3e1f91c10d6c224 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/core/src/fmt/mod.rs:1209:17 [INFO] [stderr] 5: 0x5633e996b0f5 - std::io::Write::write_fmt::he1f986100980651d [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/io/mod.rs:1679:15 [INFO] [stderr] 6: 0x5633e996fcd3 - std::sys_common::backtrace::_print::h26c5f0fe9d048f5c [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x5633e996fcd3 - std::sys_common::backtrace::print::h9d099d945c0c1b8a [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x5633e996fcd3 - std::panicking::default_hook::{{closure}}::h56372a8ac9698e26 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panicking.rs:267:22 [INFO] [stderr] 9: 0x5633e996f9aa - std::panicking::default_hook::h73cceb7588e9295f [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panicking.rs:286:9 [INFO] [stderr] 10: 0x5633e9970379 - std::panicking::rust_panic_with_hook::hf37833f4792b3823 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panicking.rs:669:13 [INFO] [stderr] 11: 0x5633e9970277 - std::panicking::begin_panic_handler::{{closure}}::hc7fd5d2a7e5e3a2c [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panicking.rs:560:13 [INFO] [stderr] 12: 0x5633e996e94c - std::sys_common::backtrace::__rust_end_short_backtrace::hff4139a3352a2109 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x5633e996ff92 - rust_begin_unwind [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panicking.rs:556:5 [INFO] [stderr] 14: 0x5633e991bb53 - core::panicking::panic_fmt::ha0d07fe43fc911c7 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/core/src/panicking.rs:142:14 [INFO] [stderr] 15: 0x5633e9923bfd - cmake::fail::h66159ae982e7f971 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] 16: 0x5633e992362c - cmake::run::h48d1a5c0c4f6c137 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:574:9 [INFO] [stderr] 17: 0x5633e992132f - cmake::Config::build::h3b087a2acd038ee9 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:481:9 [INFO] [stderr] 18: 0x5633e991c5ae - build_script_build::main::hee8d09f35121bccf [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/build.rs:19:15 [INFO] [stderr] 19: 0x5633e991d2bb - core::ops::function::FnOnce::call_once::ha13980e1ff6909e3 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/core/src/ops/function.rs:251:5 [INFO] [stderr] 20: 0x5633e991d6ce - std::sys_common::backtrace::__rust_begin_short_backtrace::h1d4a4d60f404fdc2 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 21: 0x5633e991d121 - std::rt::lang_start::{{closure}}::hb40fd34fb4e40dff [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/rt.rs:166:18 [INFO] [stderr] 22: 0x5633e9967c9f - core::ops::function::impls:: for &F>::call_once::hbcd82617322775b3 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/core/src/ops/function.rs:286:13 [INFO] [stderr] 23: 0x5633e9967c9f - std::panicking::try::do_call::h1be115a52b2174f8 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panicking.rs:464:40 [INFO] [stderr] 24: 0x5633e9967c9f - std::panicking::try::h1c0fd8b8b238ab4b [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panicking.rs:428:19 [INFO] [stderr] 25: 0x5633e9967c9f - std::panic::catch_unwind::h5a3f0c1aa7944611 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panic.rs:137:14 [INFO] [stderr] 26: 0x5633e9967c9f - std::rt::lang_start_internal::{{closure}}::hd5286103c21ad56f [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/rt.rs:148:48 [INFO] [stderr] 27: 0x5633e9967c9f - std::panicking::try::do_call::h33e890a300c8efe5 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panicking.rs:464:40 [INFO] [stderr] 28: 0x5633e9967c9f - std::panicking::try::hef61bf35d69fcfb3 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panicking.rs:428:19 [INFO] [stderr] 29: 0x5633e9967c9f - std::panic::catch_unwind::h24dc085669719b40 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/panic.rs:137:14 [INFO] [stderr] 30: 0x5633e9967c9f - std::rt::lang_start_internal::h84577dca0f995935 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/rt.rs:148:20 [INFO] [stderr] 31: 0x5633e991d0fa - std::rt::lang_start::h74c25b25e6f21fe5 [INFO] [stderr] at /rustc/01af5040fdada6ef8f1b749cda798d80a8590b2c/library/std/src/rt.rs:165:17 [INFO] [stderr] 32: 0x5633e991d0b1 - main [INFO] [stderr] 33: 0x7fd82caf6083 - __libc_start_main [INFO] [stderr] 34: 0x5633e991bd2e - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "94403d09ea6f83babd210ddb9c434e7bfd9d6eb62d48619b174618a0a77de9a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "94403d09ea6f83babd210ddb9c434e7bfd9d6eb62d48619b174618a0a77de9a5", kill_on_drop: false }` [INFO] [stdout] 94403d09ea6f83babd210ddb9c434e7bfd9d6eb62d48619b174618a0a77de9a5