[INFO] fetching crate flann-sys 0.1.0... [INFO] checking flann-sys-0.1.0 against try#45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 for pr-83744 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 821398c968e3978931ecb4ffa073329f68bbe1133fbabb500fd6fac55f97dc2e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "821398c968e3978931ecb4ffa073329f68bbe1133fbabb500fd6fac55f97dc2e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "821398c968e3978931ecb4ffa073329f68bbe1133fbabb500fd6fac55f97dc2e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "821398c968e3978931ecb4ffa073329f68bbe1133fbabb500fd6fac55f97dc2e", kill_on_drop: false }` [INFO] [stdout] 821398c968e3978931ecb4ffa073329f68bbe1133fbabb500fd6fac55f97dc2e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] db9eb7a9522f28c800af527a3fbf739c117f08154784f2677da0c105f2bd0f19 [INFO] running `Command { std: "docker" "start" "-a" "db9eb7a9522f28c800af527a3fbf739c117f08154784f2677da0c105f2bd0f19", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.93 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-46f5be5e2b19050d/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-ec6d7c4d53ac4f06/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-ec6d7c4d53ac4f06/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-ec6d7c4d53ac4f06/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55eb3c6e9990 - std::backtrace_rs::backtrace::libunwind::trace::hec7eaac9435d3512 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55eb3c6e9990 - std::backtrace_rs::backtrace::trace_unsynchronized::h42791b8fa12b7daa [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55eb3c6e9990 - std::sys_common::backtrace::_print_fmt::h3da3ebe04fb665a8 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55eb3c6e9990 - ::fmt::he40bcdde3c4491cd [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55eb3c70fb3f - core::fmt::write::h2c729149c08098ab [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x55eb3c6e6485 - std::io::Write::write_fmt::h28e0f2f58b8d7b7e [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/io/mod.rs:1578:15 [INFO] [stderr] 6: 0x55eb3c6ebffb - std::sys_common::backtrace::_print::h7f0223b1e3d898fc [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55eb3c6ebffb - std::sys_common::backtrace::print::h58edd634a14c2d4c [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55eb3c6ebffb - std::panicking::default_hook::{{closure}}::h71657a7591430164 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55eb3c6ebadd - std::panicking::default_hook::hcdf4eb5db072c85b [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55eb3c6ec5ad - std::panicking::rust_panic_with_hook::hfb91e961ffb5b8e0 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55eb3c6ec1a7 - std::panicking::begin_panic_handler::{{closure}}::h984d540e84311150 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:497:13 [INFO] [stderr] 12: 0x55eb3c6e9e2c - std::sys_common::backtrace::__rust_end_short_backtrace::h32354258ff2aecd1 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55eb3c6ec109 - rust_begin_unwind [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x55eb3c2119db - std::panicking::begin_panic_fmt::ha0ce415375ca426f [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:435:5 [INFO] [stderr] 15: 0x55eb3c21d433 - cmake::fail::hc08fb250d458ec53 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] 16: 0x55eb3c21cd92 - cmake::run::hd7a44acc37016888 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9 [INFO] [stderr] 17: 0x55eb3c219055 - cmake::Config::build::h53b6457c050ff7f7 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:707:13 [INFO] [stderr] 18: 0x55eb3c2146ea - build_script_build::main::hb0351e43ae4445bf [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30:19 [INFO] [stderr] 19: 0x55eb3c2134eb - core::ops::function::FnOnce::call_once::h75b7d250860e950c [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x55eb3c213cde - std::sys_common::backtrace::__rust_begin_short_backtrace::h7aa9d9c0ce41257f [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 21: 0x55eb3c213a11 - std::rt::lang_start::{{closure}}::h52f935e0050354a0 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/rt.rs:66:18 [INFO] [stderr] 22: 0x55eb3c6ec9aa - core::ops::function::impls:: for &F>::call_once::hd5953dadf0bc8f54 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55eb3c6ec9aa - std::panicking::try::do_call::h23b369f1996fb7d4 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:379:40 [INFO] [stderr] 24: 0x55eb3c6ec9aa - std::panicking::try::he017ee9ed6bce192 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:343:19 [INFO] [stderr] 25: 0x55eb3c6ec9aa - std::panic::catch_unwind::hbfb892340a78b30d [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panic.rs:431:14 [INFO] [stderr] 26: 0x55eb3c6ec9aa - std::rt::lang_start_internal::hce6e4c0ce56abb51 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x55eb3c2139f0 - std::rt::lang_start::h5674ae65fe3e5e75 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/rt.rs:65:5 [INFO] [stderr] 28: 0x55eb3c214b3c - main [INFO] [stderr] 29: 0x7f49dc5140b3 - __libc_start_main [INFO] [stderr] 30: 0x55eb3c212dee - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "db9eb7a9522f28c800af527a3fbf739c117f08154784f2677da0c105f2bd0f19", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "db9eb7a9522f28c800af527a3fbf739c117f08154784f2677da0c105f2bd0f19", kill_on_drop: false }` [INFO] [stdout] db9eb7a9522f28c800af527a3fbf739c117f08154784f2677da0c105f2bd0f19