[INFO] fetching crate d4-hts 0.1.17... [INFO] checking d4-hts-0.1.17 against try#45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 for pr-83744 [INFO] extracting crate d4-hts 0.1.17 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate d4-hts 0.1.17 on toolchain 45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.1.17 [INFO] finished tweaking crates.io crate d4-hts 0.1.17 [INFO] tweaked toml for crates.io crate d4-hts 0.1.17 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ff6a5f81f59189f144e933a8358bc1be9f02e05f28156e01600c65a3351c0de0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ff6a5f81f59189f144e933a8358bc1be9f02e05f28156e01600c65a3351c0de0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ff6a5f81f59189f144e933a8358bc1be9f02e05f28156e01600c65a3351c0de0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ff6a5f81f59189f144e933a8358bc1be9f02e05f28156e01600c65a3351c0de0", kill_on_drop: false }` [INFO] [stdout] ff6a5f81f59189f144e933a8358bc1be9f02e05f28156e01600c65a3351c0de0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e05bc48d7d31b64713f92a9769b549d289eac5a04635da6651e6c7526abe5abf [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e05bc48d7d31b64713f92a9769b549d289eac5a04635da6651e6c7526abe5abf", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.93 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.23 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex v1.4.5 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-hts v0.1.17 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.17 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-a7c63d4e72e92368/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-393aaac560e18574/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-393aaac560e18574/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55577a597fb0 - std::backtrace_rs::backtrace::libunwind::trace::hec7eaac9435d3512 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55577a597fb0 - std::backtrace_rs::backtrace::trace_unsynchronized::h42791b8fa12b7daa [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55577a597fb0 - std::sys_common::backtrace::_print_fmt::h3da3ebe04fb665a8 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55577a597fb0 - ::fmt::he40bcdde3c4491cd [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55577a5bcf8f - core::fmt::write::h2c729149c08098ab [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x55577a594f55 - std::io::Write::write_fmt::h28e0f2f58b8d7b7e [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/io/mod.rs:1578:15 [INFO] [stderr] 6: 0x55577a59a12b - std::sys_common::backtrace::_print::h7f0223b1e3d898fc [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55577a59a12b - std::sys_common::backtrace::print::h58edd634a14c2d4c [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55577a59a12b - std::panicking::default_hook::{{closure}}::h71657a7591430164 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55577a599c0d - std::panicking::default_hook::hcdf4eb5db072c85b [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55577a59a6dd - std::panicking::rust_panic_with_hook::hfb91e961ffb5b8e0 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55577a59a2a7 - std::panicking::begin_panic_handler::{{closure}}::h984d540e84311150 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x55577a59844c - std::sys_common::backtrace::__rust_end_short_backtrace::h32354258ff2aecd1 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55577a59a239 - rust_begin_unwind [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x55577a074641 - core::panicking::panic_fmt::he3827412471ccbb1 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55577a07458d - core::panicking::panic::hc9da14adaf11eba7 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55577a077732 - build_script_build::build_own_htslib::h5249223a830c40d7 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:33:5 [INFO] [stderr] 17: 0x55577a077c4e - build_script_build::main::hd3a7edce546302a4 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:65:9 [INFO] [stderr] 18: 0x55577a076c1b - core::ops::function::FnOnce::call_once::h72ddb9eb8df61d33 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55577a075b6e - std::sys_common::backtrace::__rust_begin_short_backtrace::h34d3a4a19f5e9a00 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55577a076af1 - std::rt::lang_start::{{closure}}::h2cb778379ccc0e3b [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x55577a59aada - core::ops::function::impls:: for &F>::call_once::hd5953dadf0bc8f54 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55577a59aada - std::panicking::try::do_call::h23b369f1996fb7d4 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x55577a59aada - std::panicking::try::he017ee9ed6bce192 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x55577a59aada - std::panic::catch_unwind::hbfb892340a78b30d [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panic.rs:431:14 [INFO] [stderr] 25: 0x55577a59aada - std::rt::lang_start_internal::hce6e4c0ce56abb51 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x55577a076ad0 - std::rt::lang_start::hd54283051a981d0e [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x55577a07827c - main [INFO] [stderr] 28: 0x7f3cf62c00b3 - __libc_start_main [INFO] [stderr] 29: 0x55577a074dde - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "e05bc48d7d31b64713f92a9769b549d289eac5a04635da6651e6c7526abe5abf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e05bc48d7d31b64713f92a9769b549d289eac5a04635da6651e6c7526abe5abf", kill_on_drop: false }` [INFO] [stdout] e05bc48d7d31b64713f92a9769b549d289eac5a04635da6651e6c7526abe5abf