[INFO] fetching crate chemfiles 0.10.0... [INFO] checking chemfiles-0.10.0 against try#45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 for pr-83744 [INFO] extracting crate chemfiles 0.10.0 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate chemfiles 0.10.0 on toolchain 45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate chemfiles 0.10.0 [INFO] finished tweaking crates.io crate chemfiles 0.10.0 [INFO] tweaked toml for crates.io crate chemfiles 0.10.0 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate crates.io crate chemfiles 0.10.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded approx v0.4.0 [INFO] [stderr] Downloaded chemfiles-sys v0.10.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b5e910c0b78eba22fc1234d28ee9be7981bb5068fa5d0761b884e9ef2992b139 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b5e910c0b78eba22fc1234d28ee9be7981bb5068fa5d0761b884e9ef2992b139", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b5e910c0b78eba22fc1234d28ee9be7981bb5068fa5d0761b884e9ef2992b139", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b5e910c0b78eba22fc1234d28ee9be7981bb5068fa5d0761b884e9ef2992b139", kill_on_drop: false }` [INFO] [stdout] b5e910c0b78eba22fc1234d28ee9be7981bb5068fa5d0761b884e9ef2992b139 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f7b29ae069acfd842a135d7d9bf593dad1d65f09aa155cabc55c63b5f6faafbc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f7b29ae069acfd842a135d7d9bf593dad1d65f09aa155cabc55c63b5f6faafbc", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling chemfiles-sys v0.10.0 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-51d553d97ae62f21/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/." "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-264cf382bb0ddfc3/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking bzip2 sources [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking pugixml sources [INFO] [stderr] -- Unpacking xdrfile sources [INFO] [stderr] -- Unpacking gemmi sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-264cf382bb0ddfc3/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" [INFO] [stderr] Scanning dependencies of target xdrfile [INFO] [stderr] Scanning dependencies of target pugixml [INFO] [stderr] Scanning dependencies of target zlib [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target bzip2 [INFO] [stderr] [ 1%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_trr.c.o [INFO] [stderr] [ 1%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_xtc.c.o [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] [ 2%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o [INFO] [stderr] [ 3%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/huffman.c.o [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] [ 4%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/liblib/nc_initialize.c.o [INFO] [stderr] [ 4%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target lzma [INFO] [stderr] [ 4%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/attr.c.o [INFO] [stderr] [ 5%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/crctable.c.o [INFO] [stderr] [ 5%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o 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chemfiles/CMakeFiles/chemfiles_objects.dir/src/UnitCell.cpp.o [INFO] [stderr] [ 79%] Built target fmt [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning (dev) in CMakeLists.txt: [INFO] [stderr] No project() command is present. The top-level CMakeLists.txt file must [INFO] [stderr] contain a literal, direct call to the project() command. Add a line of [INFO] [stderr] code such as [INFO] [stderr] [INFO] [stderr] project(ProjectName) [INFO] [stderr] [INFO] [stderr] near the top of the file, but after cmake_minimum_required(). [INFO] [stderr] [INFO] [stderr] CMake is pretending there is a "project(Project)" command on the first [INFO] [stderr] line. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at chemfiles/CMakeLists.txt:33 (option): [INFO] [stderr] Policy CMP0077 is not set: option() honors normal variables. Run "cmake [INFO] [stderr] --help-policy CMP0077" for policy details. Use the cmake_policy command to [INFO] [stderr] set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:76: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:154: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:332: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55608b83e9f0 - std::backtrace_rs::backtrace::libunwind::trace::hec7eaac9435d3512 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55608b83e9f0 - std::backtrace_rs::backtrace::trace_unsynchronized::h42791b8fa12b7daa [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55608b83e9f0 - std::sys_common::backtrace::_print_fmt::h3da3ebe04fb665a8 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55608b83e9f0 - ::fmt::he40bcdde3c4491cd [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55608b85ed5f - core::fmt::write::h2c729149c08098ab [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x55608b83b895 - std::io::Write::write_fmt::h28e0f2f58b8d7b7e [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/io/mod.rs:1578:15 [INFO] [stderr] 6: 0x55608b840f3b - std::sys_common::backtrace::_print::h7f0223b1e3d898fc [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55608b840f3b - std::sys_common::backtrace::print::h58edd634a14c2d4c [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55608b840f3b - std::panicking::default_hook::{{closure}}::h71657a7591430164 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55608b840a1d - std::panicking::default_hook::hcdf4eb5db072c85b [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55608b8414ed - std::panicking::rust_panic_with_hook::hfb91e961ffb5b8e0 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55608b8410e7 - std::panicking::begin_panic_handler::{{closure}}::h984d540e84311150 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:497:13 [INFO] [stderr] 12: 0x55608b83ee8c - std::sys_common::backtrace::__rust_end_short_backtrace::h32354258ff2aecd1 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55608b841049 - rust_begin_unwind [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x55608b7c19db - std::panicking::begin_panic_fmt::ha0ce415375ca426f [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:435:5 [INFO] [stderr] 15: 0x55608b7cc023 - cmake::fail::h67d156b2a7e4ca30 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] 16: 0x55608b7cb982 - cmake::run::hfe3e41b26fdb15d9 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9 [INFO] [stderr] 17: 0x55608b7c8884 - cmake::Config::build::hc4fe550c5b944949 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:778:9 [INFO] [stderr] 18: 0x55608b7c2aa8 - build_script_build::build_chemfiles::he2ae362867a0eeca [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/build.rs:18:19 [INFO] [stderr] 19: 0x55608b7c28de - build_script_build::main::hf8a274b718fce9a0 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.0/build.rs:8:19 [INFO] [stderr] 20: 0x55608b7c37bb - core::ops::function::FnOnce::call_once::hbede701702854f0c [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 21: 0x55608b7c36ce - std::sys_common::backtrace::__rust_begin_short_backtrace::hbf8582556cdc51e0 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 22: 0x55608b7c4481 - std::rt::lang_start::{{closure}}::h8bc2b7be8159c328 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/rt.rs:66:18 [INFO] [stderr] 23: 0x55608b8418ea - core::ops::function::impls:: for &F>::call_once::hd5953dadf0bc8f54 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 24: 0x55608b8418ea - std::panicking::try::do_call::h23b369f1996fb7d4 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:379:40 [INFO] [stderr] 25: 0x55608b8418ea - std::panicking::try::he017ee9ed6bce192 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panicking.rs:343:19 [INFO] [stderr] 26: 0x55608b8418ea - std::panic::catch_unwind::hbfb892340a78b30d [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/panic.rs:431:14 [INFO] [stderr] 27: 0x55608b8418ea - std::rt::lang_start_internal::hce6e4c0ce56abb51 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/rt.rs:51:25 [INFO] [stderr] 28: 0x55608b7c4460 - std::rt::lang_start::h6429b9ad732a2234 [INFO] [stderr] at /rustc/45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4/library/std/src/rt.rs:65:5 [INFO] [stderr] 29: 0x55608b7c334c - main [INFO] [stderr] 30: 0x7f02ace1e0b3 - __libc_start_main [INFO] [stderr] 31: 0x55608b7c280e - _start [INFO] [stderr] 32: 0x0 - [INFO] running `Command { std: "docker" "inspect" "f7b29ae069acfd842a135d7d9bf593dad1d65f09aa155cabc55c63b5f6faafbc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f7b29ae069acfd842a135d7d9bf593dad1d65f09aa155cabc55c63b5f6faafbc", kill_on_drop: false }` [INFO] [stdout] f7b29ae069acfd842a135d7d9bf593dad1d65f09aa155cabc55c63b5f6faafbc