[INFO] cloning repository https://github.com/mosmeh/maguro [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mosmeh/maguro" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmosmeh%2Fmaguro", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmosmeh%2Fmaguro'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a6572410a579ae2540a67d63a136c1ee7a99071b [INFO] checking mosmeh/maguro against try#45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 for pr-83744 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmosmeh%2Fmaguro" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mosmeh/maguro on toolchain 45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mosmeh/maguro [INFO] finished tweaking git repo https://github.com/mosmeh/maguro [INFO] tweaked toml for git repo https://github.com/mosmeh/maguro written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/mosmeh/maguro already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating git repository `https://github.com/srirampc/sufsort-rs.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded triple_accel v0.3.4 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded bv v0.11.1 [INFO] [stderr] Downloaded bio v0.32.0 [INFO] [stderr] Downloaded bio-types v0.10.0 [INFO] [stderr] Downloaded radium v0.6.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ea0249fa9a42e8b03de8023a219dda0afd7a69b5829e65671ff129f65d3ee4c7 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ea0249fa9a42e8b03de8023a219dda0afd7a69b5829e65671ff129f65d3ee4c7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ea0249fa9a42e8b03de8023a219dda0afd7a69b5829e65671ff129f65d3ee4c7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ea0249fa9a42e8b03de8023a219dda0afd7a69b5829e65671ff129f65d3ee4c7", kill_on_drop: false }` [INFO] [stdout] ea0249fa9a42e8b03de8023a219dda0afd7a69b5829e65671ff129f65d3ee4c7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1c4d239641cdbc6ae956bba85d30831f4f282481e8af33586c9690bbc0d1e348 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1c4d239641cdbc6ae956bba85d30831f4f282481e8af33586c9690bbc0d1e348", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.58 [INFO] [stderr] Compiling libc v0.2.82 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling serde_derive v1.0.118 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling serde v1.0.118 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Checking byteorder v1.4.2 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling radium v0.6.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Checking regex-syntax v0.6.22 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Compiling anyhow v1.0.37 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling sufsort-rs v0.1.0 (https://github.com/srirampc/sufsort-rs.git#cc6bdb13) [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking tap v1.0.0 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking funty v1.1.0 [INFO] [stderr] Checking wyz v0.2.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking encode_unicode v0.3.6 [INFO] [stderr] Checking rustc-hash v1.1.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Checking thread_local v1.1.0 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking itertools v0.10.0 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking bitvec v0.20.1 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking dirs v1.0.5 [INFO] [stderr] Checking crossbeam-epoch v0.9.1 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Compiling ksw2 v0.1.0 (/opt/rustwide/workdir/ksw2) [INFO] [stderr] Checking term v0.5.2 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: cc: error: ksw2/kalloc.c: No such file or directory [INFO] [stderr] warning: cc: fatal error: no input files [INFO] [stderr] warning: compilation terminated. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `ksw2 v0.1.0 (/opt/rustwide/workdir/ksw2)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/ksw2-a75055183a254519/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] OPT_LEVEL = Some("3") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some("fxsr,sse,sse2") [INFO] [stderr] running: "cc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-o" "/opt/rustwide/target/debug/build/ksw2-b4cdbfba8d007969/out/ksw2/kalloc.o" "-c" "ksw2/kalloc.c" [INFO] [stderr] cargo:warning=cc: error: ksw2/kalloc.c: No such file or directory [INFO] [stderr] cargo:warning=cc: fatal error: no input files [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] exit status: 1 [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred: Command "cc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-o" "/opt/rustwide/target/debug/build/ksw2-b4cdbfba8d007969/out/ksw2/kalloc.o" "-c" "ksw2/kalloc.c" with args "cc" did not execute successfully (status code exit status: 1). [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "1c4d239641cdbc6ae956bba85d30831f4f282481e8af33586c9690bbc0d1e348", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1c4d239641cdbc6ae956bba85d30831f4f282481e8af33586c9690bbc0d1e348", kill_on_drop: false }` [INFO] [stdout] 1c4d239641cdbc6ae956bba85d30831f4f282481e8af33586c9690bbc0d1e348