[INFO] cloning repository https://github.com/HopedWall/rs-vgaligner [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HopedWall/rs-vgaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 976efad2fec0d6d29fafb4a3b2bb9e0b0062b115 [INFO] checking HopedWall/rs-vgaligner against try#45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 for pr-83744 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/HopedWall/rs-vgaligner on toolchain 45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/HopedWall/rs-vgaligner [INFO] finished tweaking git repo https://github.com/HopedWall/rs-vgaligner [INFO] tweaked toml for git repo https://github.com/HopedWall/rs-vgaligner written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/HopedWall/rs-vgaligner already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded triple_accel v0.3.4 [INFO] [stderr] Downloaded snafu-derive v0.6.10 [INFO] [stderr] Downloaded enum-map-derive v0.4.6 [INFO] [stderr] Downloaded boomphf v0.5.9 [INFO] [stderr] Downloaded bv v0.11.1 [INFO] [stderr] Downloaded wyhash v0.5.0 [INFO] [stderr] Downloaded bytemuck_derive v1.0.1 [INFO] [stderr] Downloaded ahash v0.7.2 [INFO] [stderr] Downloaded bio-types v0.10.0 [INFO] [stderr] Downloaded array-macro v1.0.5 [INFO] [stderr] Downloaded gfa v0.8.0 [INFO] [stderr] Downloaded handlegraph v0.5.0 [INFO] [stderr] Downloaded bio v0.32.0 [INFO] [stderr] Downloaded substring v1.4.5 [INFO] [stderr] Downloaded statrs v0.12.0 [INFO] [stderr] Downloaded enum-map v0.6.4 [INFO] [stderr] Downloaded snafu v0.6.10 [INFO] [stderr] Downloaded newtype_derive v0.1.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 90a53526f8c38c7502436dbb1659ee8c9925f27e0f293904bdf921cc1f6ff19e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "90a53526f8c38c7502436dbb1659ee8c9925f27e0f293904bdf921cc1f6ff19e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "90a53526f8c38c7502436dbb1659ee8c9925f27e0f293904bdf921cc1f6ff19e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "90a53526f8c38c7502436dbb1659ee8c9925f27e0f293904bdf921cc1f6ff19e", kill_on_drop: false }` [INFO] [stdout] 90a53526f8c38c7502436dbb1659ee8c9925f27e0f293904bdf921cc1f6ff19e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 33ec2bb6bfa6c2169120b2a577bf95cf1120a2e494dcef8aed3cf996fdcd13de [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "33ec2bb6bfa6c2169120b2a577bf95cf1120a2e494dcef8aed3cf996fdcd13de", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking once_cell v1.7.0 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking regex-syntax v0.6.22 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking arrayvec v0.5.2 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Checking newtype_derive v0.1.4 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking thread_local v1.1.3 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Checking wyhash v0.5.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling ahash v0.7.2 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.3 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling substring v1.4.5 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking log v0.4.14 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking lexical-core v0.7.5 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking crossbeam-epoch v0.9.3 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rayon-core v1.9.0 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v1.4.3 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Checking boomphf v0.5.9 [INFO] [stderr] Compiling serde_derive v1.0.123 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling bytemuck_derive v1.0.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking bytemuck v1.5.1 [INFO] [stderr] Checking bio-types v0.10.0 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Checking serde v1.0.123 [INFO] [stderr] Checking bstr v0.2.15 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.5 [INFO] [stderr] Checking gfa v0.8.0 [INFO] [stderr] Checking handlegraph v0.5.0 [INFO] [stderr] Checking vgaligner v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `Handle` [INFO] [stdout] --> src/index.rs:10:33 [INFO] [stdout] | [INFO] [stdout] 10 | use handlegraph::handle::{Edge, Handle}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `boomphf::Mphf` [INFO] [stdout] --> src/index.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | use boomphf::Mphf; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `generate_kmers_linearly_2` [INFO] [stdout] --> src/index.rs:136:48 [INFO] [stdout] | [INFO] [stdout] 136 | use crate::kmer::{generate_kmers_linearly, generate_kmers_linearly_2}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `handlegraph::hashgraph::Node` [INFO] [stdout] --> src/index.rs:137:9 [INFO] [stdout] | [INFO] [stdout] 137 | use handlegraph::hashgraph::Node; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `substring::Substring` [INFO] [stdout] --> src/index.rs:140:9 [INFO] [stdout] | [INFO] [stdout] 140 | use substring::Substring; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `boomphf::*` [INFO] [stdout] --> src/kmer.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use boomphf::*; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `graph_index` [INFO] [stdout] --> src/main.rs:109:9 [INFO] [stdout] | [INFO] [stdout] 109 | let graph_index = Index::build( [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_graph_index` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `number_nodes` [INFO] [stdout] --> src/index.rs:67:13 [INFO] [stdout] | [INFO] [stdout] 67 | let number_nodes = graph.graph.len(); [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_number_nodes` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sampling_rate` [INFO] [stdout] --> src/index.rs:63:9 [INFO] [stdout] | [INFO] [stdout] 63 | sampling_rate: f32, [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sampling_rate` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `out_prefix` [INFO] [stdout] --> src/index.rs:64:9 [INFO] [stdout] | [INFO] [stdout] 64 | out_prefix: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_out_prefix` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `forward` [INFO] [stdout] --> src/index.rs:199:13 [INFO] [stdout] | [INFO] [stdout] 199 | let forward = find_sequence_po(&graph, &mut seq_bv, &mut node_ref); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_forward` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `forward` [INFO] [stdout] --> src/index.rs:224:13 [INFO] [stdout] | [INFO] [stdout] 224 | let forward = find_sequence_po(&graph, &mut seq_bv, &mut node_ref); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_forward` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `forward` [INFO] [stdout] --> src/index.rs:432:13 [INFO] [stdout] | [INFO] [stdout] 432 | let forward = find_sequence_po(&graph, &mut seq_bv, &mut node_ref); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_forward` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer` [INFO] [stdout] --> src/index.rs:444:17 [INFO] [stdout] | [INFO] [stdout] 444 | let kmer = kmers_on_graph.get(i).unwrap(); [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_kmer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `edge_max` [INFO] [stdout] --> src/kmer.rs:257:5 [INFO] [stdout] | [INFO] [stdout] 257 | edge_max: Option, [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_edge_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `degree_max` [INFO] [stdout] --> src/kmer.rs:258:5 [INFO] [stdout] | [INFO] [stdout] 258 | degree_max: Option, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_degree_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `edge_max` [INFO] [stdout] --> src/kmer.rs:333:5 [INFO] [stdout] | [INFO] [stdout] 333 | edge_max: Option, [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_edge_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `degree_max` [INFO] [stdout] --> src/kmer.rs:334:5 [INFO] [stdout] | [INFO] [stdout] 334 | degree_max: Option, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_degree_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `kmers` is never read [INFO] [stdout] --> src/kmer.rs:429:13 [INFO] [stdout] | [INFO] [stdout] 429 | let mut kmers: Vec = Vec::new(); [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `forward` [INFO] [stdout] --> src/kmer.rs:662:5 [INFO] [stdout] | [INFO] [stdout] 662 | forward: &String, [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_forward` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_bw` [INFO] [stdout] --> src/kmer.rs:663:5 [INFO] [stdout] | [INFO] [stdout] 663 | seq_bw: &BitVec, [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_bw` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/kmer.rs:702:13 [INFO] [stdout] | [INFO] [stdout] 702 | let seq = kmer_graph_ref.seq.clone(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos_on_fwd` [INFO] [stdout] --> src/kmer.rs:704:13 [INFO] [stdout] | [INFO] [stdout] 704 | let pos_on_fwd = kmers_on_fwd.get(i).unwrap(); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pos_on_fwd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Handle` [INFO] [stdout] --> src/index.rs:10:33 [INFO] [stdout] | [INFO] [stdout] 10 | use handlegraph::handle::{Edge, Handle}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `boomphf::Mphf` [INFO] [stdout] --> src/index.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | use boomphf::Mphf; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `boomphf::*` [INFO] [stdout] --> src/kmer.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use boomphf::*; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/index.rs:424:13 [INFO] [stdout] | [INFO] [stdout] 424 | let mut graph = create_simple_graph(); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:160:21 [INFO] [stdout] | [INFO] [stdout] 160 | let mut kmer = Kmer { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:300:21 [INFO] [stdout] | [INFO] [stdout] 300 | let mut kmer = Kmer { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:381:21 [INFO] [stdout] | [INFO] [stdout] 381 | let mut kmer = Kmer { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:489:25 [INFO] [stdout] | [INFO] [stdout] 489 | let mut kmer = Kmer { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:647:13 [INFO] [stdout] | [INFO] [stdout] 647 | let mut pos = KmerPos { [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:696:9 [INFO] [stdout] | [INFO] [stdout] 696 | let mut kmers_hashed: AHashMap = AHashMap::new(); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_length` [INFO] [stdout] --> src/index.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | kmer_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `sampling_length` [INFO] [stdout] --> src/index.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | sampling_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_length` [INFO] [stdout] --> src/index.rs:21:5 [INFO] [stdout] | [INFO] [stdout] 21 | seq_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_fwd` [INFO] [stdout] --> src/index.rs:23:5 [INFO] [stdout] | [INFO] [stdout] 23 | seq_fwd: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_rev` [INFO] [stdout] --> src/index.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | seq_rev: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_bv` [INFO] [stdout] --> src/index.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 27 | seq_bv: BitVec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_edges` [INFO] [stdout] --> src/index.rs:31:5 [INFO] [stdout] | [INFO] [stdout] 31 | n_edges: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `edges` [INFO] [stdout] --> src/index.rs:33:5 [INFO] [stdout] | [INFO] [stdout] 33 | edges: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_nodes` [INFO] [stdout] --> src/index.rs:35:5 [INFO] [stdout] | [INFO] [stdout] 35 | n_nodes: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `node_ref` [INFO] [stdout] --> src/index.rs:37:5 [INFO] [stdout] | [INFO] [stdout] 37 | node_ref: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_kmers` [INFO] [stdout] --> src/index.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | n_kmers: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_kmer_pos` [INFO] [stdout] --> src/index.rs:41:5 [INFO] [stdout] | [INFO] [stdout] 41 | n_kmer_pos: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_pos_table` [INFO] [stdout] --> src/index.rs:47:5 [INFO] [stdout] | [INFO] [stdout] 47 | kmer_pos_table: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `loaded` [INFO] [stdout] --> src/index.rs:49:5 [INFO] [stdout] | [INFO] [stdout] 49 | loaded: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/index.rs:54:8 [INFO] [stdout] | [INFO] [stdout] 54 | fn new() -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | file.write_all(">ref\n".as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:37:5 [INFO] [stdout] | [INFO] [stdout] 37 | file.write_all(seq.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:46:9 [INFO] [stdout] | [INFO] [stdout] 46 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:47:9 [INFO] [stdout] | [INFO] [stdout] 47 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:62:9 [INFO] [stdout] | [INFO] [stdout] 62 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:68:9 [INFO] [stdout] | [INFO] [stdout] 68 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:69:9 [INFO] [stdout] | [INFO] [stdout] 69 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:81:5 [INFO] [stdout] | [INFO] [stdout] 81 | file.write_all(reference.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:92:13 [INFO] [stdout] | [INFO] [stdout] 92 | file.write_all(kmer_string.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:112:5 [INFO] [stdout] | [INFO] [stdout] 112 | file.write_all(reference.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:124:9 [INFO] [stdout] | [INFO] [stdout] 124 | file.write_all(kmer_string.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `kmer_nodeId` should have a snake case name [INFO] [stdout] --> src/kmer.rs:672:13 [INFO] [stdout] | [INFO] [stdout] 672 | let kmer_nodeId = kmer_handle.unpack_number() - 1; [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `kmer_node_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `graph_index` [INFO] [stdout] --> src/main.rs:109:9 [INFO] [stdout] | [INFO] [stdout] 109 | let graph_index = Index::build( [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_graph_index` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `number_nodes` [INFO] [stdout] --> src/index.rs:67:13 [INFO] [stdout] | [INFO] [stdout] 67 | let number_nodes = graph.graph.len(); [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_number_nodes` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sampling_rate` [INFO] [stdout] --> src/index.rs:63:9 [INFO] [stdout] | [INFO] [stdout] 63 | sampling_rate: f32, [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sampling_rate` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `out_prefix` [INFO] [stdout] --> src/index.rs:64:9 [INFO] [stdout] | [INFO] [stdout] 64 | out_prefix: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_out_prefix` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `edge_max` [INFO] [stdout] --> src/kmer.rs:257:5 [INFO] [stdout] | [INFO] [stdout] 257 | edge_max: Option, [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_edge_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `degree_max` [INFO] [stdout] --> src/kmer.rs:258:5 [INFO] [stdout] | [INFO] [stdout] 258 | degree_max: Option, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_degree_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `edge_max` [INFO] [stdout] --> src/kmer.rs:333:5 [INFO] [stdout] | [INFO] [stdout] 333 | edge_max: Option, [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_edge_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `degree_max` [INFO] [stdout] --> src/kmer.rs:334:5 [INFO] [stdout] | [INFO] [stdout] 334 | degree_max: Option, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_degree_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `kmers` is never read [INFO] [stdout] --> src/kmer.rs:429:13 [INFO] [stdout] | [INFO] [stdout] 429 | let mut kmers: Vec = Vec::new(); [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `forward` [INFO] [stdout] --> src/kmer.rs:662:5 [INFO] [stdout] | [INFO] [stdout] 662 | forward: &String, [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_forward` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_bw` [INFO] [stdout] --> src/kmer.rs:663:5 [INFO] [stdout] | [INFO] [stdout] 663 | seq_bw: &BitVec, [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_bw` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/kmer.rs:702:13 [INFO] [stdout] | [INFO] [stdout] 702 | let seq = kmer_graph_ref.seq.clone(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos_on_fwd` [INFO] [stdout] --> src/kmer.rs:704:13 [INFO] [stdout] | [INFO] [stdout] 704 | let pos_on_fwd = kmers_on_fwd.get(i).unwrap(); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pos_on_fwd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 58 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:160:21 [INFO] [stdout] | [INFO] [stdout] 160 | let mut kmer = Kmer { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:300:21 [INFO] [stdout] | [INFO] [stdout] 300 | let mut kmer = Kmer { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:381:21 [INFO] [stdout] | [INFO] [stdout] 381 | let mut kmer = Kmer { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:489:25 [INFO] [stdout] | [INFO] [stdout] 489 | let mut kmer = Kmer { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:647:13 [INFO] [stdout] | [INFO] [stdout] 647 | let mut pos = KmerPos { [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:696:9 [INFO] [stdout] | [INFO] [stdout] 696 | let mut kmers_hashed: AHashMap = AHashMap::new(); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_length` [INFO] [stdout] --> src/index.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | kmer_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `sampling_length` [INFO] [stdout] --> src/index.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | sampling_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_length` [INFO] [stdout] --> src/index.rs:21:5 [INFO] [stdout] | [INFO] [stdout] 21 | seq_length: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_fwd` [INFO] [stdout] --> src/index.rs:23:5 [INFO] [stdout] | [INFO] [stdout] 23 | seq_fwd: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_rev` [INFO] [stdout] --> src/index.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | seq_rev: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq_bv` [INFO] [stdout] --> src/index.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 27 | seq_bv: BitVec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_edges` [INFO] [stdout] --> src/index.rs:31:5 [INFO] [stdout] | [INFO] [stdout] 31 | n_edges: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `edges` [INFO] [stdout] --> src/index.rs:33:5 [INFO] [stdout] | [INFO] [stdout] 33 | edges: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_nodes` [INFO] [stdout] --> src/index.rs:35:5 [INFO] [stdout] | [INFO] [stdout] 35 | n_nodes: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `node_ref` [INFO] [stdout] --> src/index.rs:37:5 [INFO] [stdout] | [INFO] [stdout] 37 | node_ref: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_kmers` [INFO] [stdout] --> src/index.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | n_kmers: u64, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_kmer_pos` [INFO] [stdout] --> src/index.rs:41:5 [INFO] [stdout] | [INFO] [stdout] 41 | n_kmer_pos: u64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `kmer_pos_table` [INFO] [stdout] --> src/index.rs:47:5 [INFO] [stdout] | [INFO] [stdout] 47 | kmer_pos_table: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `loaded` [INFO] [stdout] --> src/index.rs:49:5 [INFO] [stdout] | [INFO] [stdout] 49 | loaded: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/index.rs:54:8 [INFO] [stdout] | [INFO] [stdout] 54 | fn new() -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | file.write_all(">ref\n".as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:37:5 [INFO] [stdout] | [INFO] [stdout] 37 | file.write_all(seq.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:46:9 [INFO] [stdout] | [INFO] [stdout] 46 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:47:9 [INFO] [stdout] | [INFO] [stdout] 47 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:62:9 [INFO] [stdout] | [INFO] [stdout] 62 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:68:9 [INFO] [stdout] | [INFO] [stdout] 68 | file.write_all(index_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:69:9 [INFO] [stdout] | [INFO] [stdout] 69 | file.write_all(kmers_str.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:81:5 [INFO] [stdout] | [INFO] [stdout] 81 | file.write_all(reference.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:92:13 [INFO] [stdout] | [INFO] [stdout] 92 | file.write_all(kmer_string.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:112:5 [INFO] [stdout] | [INFO] [stdout] 112 | file.write_all(reference.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/io.rs:124:9 [INFO] [stdout] | [INFO] [stdout] 124 | file.write_all(kmer_string.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `kmer_nodeId` should have a snake case name [INFO] [stdout] --> src/kmer.rs:672:13 [INFO] [stdout] | [INFO] [stdout] 672 | let kmer_nodeId = kmer_handle.unpack_number() - 1; [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `kmer_node_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 50 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 55s [INFO] running `Command { std: "docker" "inspect" "33ec2bb6bfa6c2169120b2a577bf95cf1120a2e494dcef8aed3cf996fdcd13de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "33ec2bb6bfa6c2169120b2a577bf95cf1120a2e494dcef8aed3cf996fdcd13de", kill_on_drop: false }` [INFO] [stdout] 33ec2bb6bfa6c2169120b2a577bf95cf1120a2e494dcef8aed3cf996fdcd13de