[INFO] cloning repository https://github.com/Fede-Berga/Variation_Graph
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Fede-Berga/Variation_Graph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFede-Berga%2FVariation_Graph", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFede-Berga%2FVariation_Graph'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1306a09381fe9979e5319d86f14e8775487d182a
[INFO] checking Fede-Berga/Variation_Graph against try#45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4 for pr-83744
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFede-Berga%2FVariation_Graph" "/workspace/builds/worker-12/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-12/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Fede-Berga/Variation_Graph on toolchain 45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Fede-Berga/Variation_Graph
[INFO] finished tweaking git repo https://github.com/Fede-Berga/Variation_Graph
[INFO] tweaked toml for git repo https://github.com/Fede-Berga/Variation_Graph written to /workspace/builds/worker-12/source/Cargo.toml
[INFO] crate git repo https://github.com/Fede-Berga/Variation_Graph already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/chfi/rs-handlegraph`
[INFO] [stderr]     Updating git repository `https://github.com/Fede-Berga/maf_parser.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded enum-map-derive v0.4.6
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[INFO] [stderr]   Downloaded triple_accel v0.3.4
[INFO] [stderr]   Downloaded gfa v0.10.0
[INFO] [stderr]   Downloaded strum_macros v0.20.1
[INFO] [stderr]   Downloaded bio v0.33.0
[INFO] [stderr]   Downloaded succinct v0.5.2
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[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 477dd8cfee9c9be2ff187fa9120f6ed7b34a4270bdcbd8f7a97240d0bfa9a299
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "477dd8cfee9c9be2ff187fa9120f6ed7b34a4270bdcbd8f7a97240d0bfa9a299", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "477dd8cfee9c9be2ff187fa9120f6ed7b34a4270bdcbd8f7a97240d0bfa9a299", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "477dd8cfee9c9be2ff187fa9120f6ed7b34a4270bdcbd8f7a97240d0bfa9a299", kill_on_drop: false }`
[INFO] [stdout] 477dd8cfee9c9be2ff187fa9120f6ed7b34a4270bdcbd8f7a97240d0bfa9a299
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+45d8b6e68beee1c9c1ce92ae258a7e02f8f13aa4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2418257b8e3f2475fa837d1a5e7e98d410f31905b398b367532a155a65671acb
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "2418257b8e3f2475fa837d1a5e7e98d410f31905b398b367532a155a65671acb", kill_on_drop: false }`
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[INFO] [stderr]    Compiling autocfg v1.0.1
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[INFO] [stderr]    Compiling bytemuck_derive v1.0.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.24
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
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[INFO] [stderr]     Checking boomphf v0.5.9
[INFO] [stderr]     Checking bytemuck v1.5.1
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking thiserror v1.0.24
[INFO] [stderr]     Checking bio-types v0.11.0
[INFO] [stderr]     Checking bstr v0.2.15
[INFO] [stderr]     Checking vec_map v0.8.2
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[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking gfa v0.10.0
[INFO] [stderr]     Checking handlegraph v0.7.0-alpha.3 (https://github.com/chfi/rs-handlegraph#c2d865df)
[INFO] [stderr]     Checking variation_graph v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] error[E0599]: no function or associated item named `new` found for struct `variation_graph::maf_paser::Alignment` in the current scope
[INFO] [stdout]   --> tests/variation_graph_test.rs:15:38
[INFO] [stdout]    |
[INFO] [stdout] 15 |     let alignment = match Alignment::new(file_name){
[INFO] [stdout]    |                                      ^^^ function or associated item not found in `variation_graph::maf_paser::Alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no function or associated item named `new` found for struct `variation_graph::maf_paser::Alignment` in the current scope
[INFO] [stdout]  --> tests/parser_test.rs:9:25
[INFO] [stdout]   |
[INFO] [stdout] 9 |     let al = Alignment::new("./dataset/file_not_found.maf");
[INFO] [stdout]   |                         ^^^ function or associated item not found in `variation_graph::maf_paser::Alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no function or associated item named `new` found for struct `variation_graph::maf_paser::Alignment` in the current scope
[INFO] [stdout]   --> tests/parser_test.rs:16:25
[INFO] [stdout]    |
[INFO] [stdout] 16 |     let al = Alignment::new("./dataset/empty.maf");
[INFO] [stdout]    |                         ^^^ function or associated item not found in `variation_graph::maf_paser::Alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no function or associated item named `new` found for struct `variation_graph::maf_paser::Alignment` in the current scope
[INFO] [stdout]   --> tests/parser_test.rs:23:58
[INFO] [stdout]    |
[INFO] [stdout] 23 |     let al : Result<Alignment, ParserError> = Alignment::new("./dataset/no_alignment_block.maf");
[INFO] [stdout]    |                                                          ^^^ function or associated item not found in `variation_graph::maf_paser::Alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no function or associated item named `new` found for struct `variation_graph::maf_paser::Alignment` in the current scope
[INFO] [stdout]   --> tests/parser_test.rs:30:25
[INFO] [stdout]    |
[INFO] [stdout] 30 |     let al = Alignment::new("./dataset/one_al_block.maf").unwrap();
[INFO] [stdout]    |                         ^^^ function or associated item not found in `variation_graph::maf_paser::Alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no function or associated item named `new` found for struct `variation_graph::maf_paser::Alignment` in the current scope
[INFO] [stdout]   --> tests/parser_test.rs:59:25
[INFO] [stdout]    |
[INFO] [stdout] 59 |     let al = Alignment::new("./dataset/one_al_block_with_info.maf").unwrap();
[INFO] [stdout]    |                         ^^^ function or associated item not found in `variation_graph::maf_paser::Alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no function or associated item named `new` found for struct `variation_graph::maf_paser::Alignment` in the current scope
[INFO] [stdout]   --> tests/parser_test.rs:80:25
[INFO] [stdout]    |
[INFO] [stdout] 80 |     let al = Alignment::new("./dataset/mul_al_block.maf").unwrap();
[INFO] [stdout]    |                         ^^^ function or associated item not found in `variation_graph::maf_paser::Alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `variation_graph`
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] error[E0599]: no function or associated item named `new` found for struct `variation_graph::maf_paser::Alignment` in the current scope
[INFO] [stdout]    --> tests/parser_test.rs:109:25
[INFO] [stdout]     |
[INFO] [stdout] 109 |     let al = Alignment::new("./dataset/test_3.maf").unwrap();
[INFO] [stdout]     |                         ^^^ function or associated item not found in `variation_graph::maf_paser::Alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 7 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "2418257b8e3f2475fa837d1a5e7e98d410f31905b398b367532a155a65671acb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2418257b8e3f2475fa837d1a5e7e98d410f31905b398b367532a155a65671acb", kill_on_drop: false }`
[INFO] [stdout] 2418257b8e3f2475fa837d1a5e7e98d410f31905b398b367532a155a65671acb