[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against master#f5f33ec0e0455eefa72fc5567eb1280a4d5ee206 for pr-83312 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain f5f33ec0e0455eefa72fc5567eb1280a4d5ee206 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f5f33ec0e0455eefa72fc5567eb1280a4d5ee206" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f5f33ec0e0455eefa72fc5567eb1280a4d5ee206" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+f5f33ec0e0455eefa72fc5567eb1280a4d5ee206" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b58a1311a12211ec073ad90c6ea19fd735a592f543a7ed332dad8f9a24a37ecf [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b58a1311a12211ec073ad90c6ea19fd735a592f543a7ed332dad8f9a24a37ecf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b58a1311a12211ec073ad90c6ea19fd735a592f543a7ed332dad8f9a24a37ecf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b58a1311a12211ec073ad90c6ea19fd735a592f543a7ed332dad8f9a24a37ecf", kill_on_drop: false }` [INFO] [stdout] b58a1311a12211ec073ad90c6ea19fd735a592f543a7ed332dad8f9a24a37ecf [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+f5f33ec0e0455eefa72fc5567eb1280a4d5ee206" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 249c1ac2fd76f1a6f494703c7ca244d6a1ebd61a24e31c0bb06d0ea2242ad700 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "249c1ac2fd76f1a6f494703c7ca244d6a1ebd61a24e31c0bb06d0ea2242ad700", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-5eb059a8ee4e4ade/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-a3ba68e155e4bde5/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-a3ba68e155e4bde5/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56315ffd0750 - std::backtrace_rs::backtrace::libunwind::trace::h4dee703919bfd40a [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x56315ffd0750 - std::backtrace_rs::backtrace::trace_unsynchronized::h457e839f1a563e20 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x56315ffd0750 - std::sys_common::backtrace::_print_fmt::h86a55fb30f8393c8 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x56315ffd0750 - ::fmt::h7b3d6cac46d277e1 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x56315ffed0df - core::fmt::write::h127419eb46f2ecc9 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/core/src/fmt/mod.rs:1092:17 [INFO] [stderr] 5: 0x56315ffcd692 - std::io::Write::write_fmt::h6010cfbb4726588b [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/io/mod.rs:1572:15 [INFO] [stderr] 6: 0x56315ffd2d35 - std::sys_common::backtrace::_print::h79b4f9652330cc9d [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x56315ffd2d35 - std::sys_common::backtrace::print::h330bb326a76af8cf [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x56315ffd2d35 - std::panicking::default_hook::{{closure}}::heb6a42a7d50a472e [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x56315ffd27e3 - std::panicking::default_hook::h17e521ba6d68d6e1 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x56315ffd333d - std::panicking::rust_panic_with_hook::h70db735e3a6e70cb [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x56315ffd2ed7 - std::panicking::begin_panic_handler::{{closure}}::h777c71c8e5a7e25c [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:497:13 [INFO] [stderr] 12: 0x56315ffd0c0c - std::sys_common::backtrace::__rust_end_short_backtrace::h3e9bf30168899554 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x56315ffd2e39 - rust_begin_unwind [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x56315ff59f2b - std::panicking::begin_panic_fmt::h0b6b6d9d830486ef [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:435:5 [INFO] [stderr] 15: 0x56315ff687dc - cmake::fail::heb59e71b364b9866 [INFO] [stderr] 16: 0x56315ff68167 - cmake::run::hd9dac8c157bb7d5f [INFO] [stderr] 17: 0x56315ff63d4a - cmake::Config::build::hf4efc54123cb85e6 [INFO] [stderr] 18: 0x56315ff5e373 - build_script_build::main::h91d7b649096c1e10 [INFO] [stderr] 19: 0x56315ff5f536 - core::ops::function::FnOnce::call_once::h680e62a17bf63ca3 [INFO] [stderr] 20: 0x56315ff5f499 - std::sys_common::backtrace::__rust_begin_short_backtrace::hd64315004ce221dd [INFO] [stderr] 21: 0x56315ff60f7c - std::rt::lang_start::{{closure}}::he25934164c5af6ed [INFO] [stderr] 22: 0x56315ffd373a - core::ops::function::impls:: for &F>::call_once::hbcc915e668c7ca11 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x56315ffd373a - std::panicking::try::do_call::h6b0f430d48122ddf [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:379:40 [INFO] [stderr] 24: 0x56315ffd373a - std::panicking::try::h6ba420e2e21b5afa [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:343:19 [INFO] [stderr] 25: 0x56315ffd373a - std::panic::catch_unwind::h8366719d1f615eee [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panic.rs:431:14 [INFO] [stderr] 26: 0x56315ffd373a - std::rt::lang_start_internal::h965c28c9ce06ee73 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x56315ff60f61 - std::rt::lang_start::hda30157e2247f226 [INFO] [stderr] 28: 0x56315ff5e563 - main [INFO] [stderr] 29: 0x7f1858b200b3 - __libc_start_main [INFO] [stderr] 30: 0x56315ff5aa6e - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "249c1ac2fd76f1a6f494703c7ca244d6a1ebd61a24e31c0bb06d0ea2242ad700", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "249c1ac2fd76f1a6f494703c7ca244d6a1ebd61a24e31c0bb06d0ea2242ad700", kill_on_drop: false }` [INFO] [stdout] 249c1ac2fd76f1a6f494703c7ca244d6a1ebd61a24e31c0bb06d0ea2242ad700