[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 15f07e7e103cd4bd5474c7098c2c3d7a72ede2bd [INFO] checking 38/pyd4 against master#f5f33ec0e0455eefa72fc5567eb1280a4d5ee206 for pr-83312 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain f5f33ec0e0455eefa72fc5567eb1280a4d5ee206 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f5f33ec0e0455eefa72fc5567eb1280a4d5ee206" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f5f33ec0e0455eefa72fc5567eb1280a4d5ee206" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:4f92631de1aa59f8320307485d3b3c869a5c90ab1d76ce2cffab9807b8c9a1fb" "/opt/rustwide/cargo-home/bin/cargo" "+f5f33ec0e0455eefa72fc5567eb1280a4d5ee206" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 76dba0fd69bae8798c02f2df2d962cb419f04c9f20c1a8282e51eb751cd5eeed [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "76dba0fd69bae8798c02f2df2d962cb419f04c9f20c1a8282e51eb751cd5eeed", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "76dba0fd69bae8798c02f2df2d962cb419f04c9f20c1a8282e51eb751cd5eeed", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "76dba0fd69bae8798c02f2df2d962cb419f04c9f20c1a8282e51eb751cd5eeed", kill_on_drop: false }` [INFO] [stdout] 76dba0fd69bae8798c02f2df2d962cb419f04c9f20c1a8282e51eb751cd5eeed [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:4f92631de1aa59f8320307485d3b3c869a5c90ab1d76ce2cffab9807b8c9a1fb" "/opt/rustwide/cargo-home/bin/cargo" "+f5f33ec0e0455eefa72fc5567eb1280a4d5ee206" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 682a1554deb85d562fb2d858746d7cb254fb4a480cccb1789ba3dedf1576eaa8 [INFO] running `Command { std: "docker" "start" "-a" "682a1554deb85d562fb2d858746d7cb254fb4a480cccb1789ba3dedf1576eaa8", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling proc-macro-hack v0.5.18 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling unindent v0.1.6 [INFO] [stderr] Compiling inventory v0.1.9 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Compiling pyo3 v0.12.1 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking lock_api v0.4.1 [INFO] [stderr] Checking instant v0.1.7 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking parking_lot_core v0.8.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.11.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.1.13 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.1 [INFO] [stderr] Compiling inventory-impl v0.1.9 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.15 [INFO] [stderr] Compiling pyo3cls v0.12.1 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-9d0d04fbac85abd4/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-fbbd2b2b8b58ac1e/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-fbbd2b2b8b58ac1e/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e2c58d9b20 - std::backtrace_rs::backtrace::libunwind::trace::h4dee703919bfd40a [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55e2c58d9b20 - std::backtrace_rs::backtrace::trace_unsynchronized::h457e839f1a563e20 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55e2c58d9b20 - std::sys_common::backtrace::_print_fmt::h86a55fb30f8393c8 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55e2c58d9b20 - ::fmt::h7b3d6cac46d277e1 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55e2c58fb6df - core::fmt::write::h127419eb46f2ecc9 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/core/src/fmt/mod.rs:1092:17 [INFO] [stderr] 5: 0x55e2c58d68e2 - std::io::Write::write_fmt::h6010cfbb4726588b [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/io/mod.rs:1572:15 [INFO] [stderr] 6: 0x55e2c58dbf45 - std::sys_common::backtrace::_print::h79b4f9652330cc9d [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55e2c58dbf45 - std::sys_common::backtrace::print::h330bb326a76af8cf [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55e2c58dbf45 - std::panicking::default_hook::{{closure}}::heb6a42a7d50a472e [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55e2c58db9f3 - std::panicking::default_hook::h17e521ba6d68d6e1 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55e2c58dc54d - std::panicking::rust_panic_with_hook::h70db735e3a6e70cb [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55e2c58dc0b7 - std::panicking::begin_panic_handler::{{closure}}::h777c71c8e5a7e25c [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x55e2c58d9fdc - std::sys_common::backtrace::__rust_end_short_backtrace::h3e9bf30168899554 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55e2c58dc049 - rust_begin_unwind [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x55e2c5376921 - core::panicking::panic_fmt::h5322a082d19786c3 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55e2c537686d - core::panicking::panic::haebb15b6842d6229 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55e2c53798e2 - build_script_build::build_own_htslib::hb29dcd7b17278fc5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] 17: 0x55e2c5379dfe - build_script_build::main::hc994d1abb83f520a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66:9 [INFO] [stderr] 18: 0x55e2c537c08b - core::ops::function::FnOnce::call_once::hdfcb5d529cd5ef17 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55e2c5377b1e - std::sys_common::backtrace::__rust_begin_short_backtrace::hf0d289be0b1127dc [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55e2c5378e21 - std::rt::lang_start::{{closure}}::h44da74bdfeef6170 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x55e2c58dca4a - core::ops::function::impls:: for &F>::call_once::hbcc915e668c7ca11 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55e2c58dca4a - std::panicking::try::do_call::h6b0f430d48122ddf [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x55e2c58dca4a - std::panicking::try::h6ba420e2e21b5afa [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x55e2c58dca4a - std::panic::catch_unwind::h8366719d1f615eee [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/panic.rs:431:14 [INFO] [stderr] 25: 0x55e2c58dca4a - std::rt::lang_start_internal::h965c28c9ce06ee73 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x55e2c5378e00 - std::rt::lang_start::h14621b9c69f98ee9 [INFO] [stderr] at /rustc/f5f33ec0e0455eefa72fc5567eb1280a4d5ee206/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x55e2c537a42c - main [INFO] [stderr] 28: 0x7f63c17770b3 - __libc_start_main [INFO] [stderr] 29: 0x55e2c537702e - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "682a1554deb85d562fb2d858746d7cb254fb4a480cccb1789ba3dedf1576eaa8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "682a1554deb85d562fb2d858746d7cb254fb4a480cccb1789ba3dedf1576eaa8", kill_on_drop: false }` [INFO] [stdout] 682a1554deb85d562fb2d858746d7cb254fb4a480cccb1789ba3dedf1576eaa8