[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against try#b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b for pr-82781 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-14/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-14/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fe13c9ee3dc75d15de7672a120918bde60d770d642c6c1e97865bc1d144e35de [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "fe13c9ee3dc75d15de7672a120918bde60d770d642c6c1e97865bc1d144e35de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fe13c9ee3dc75d15de7672a120918bde60d770d642c6c1e97865bc1d144e35de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fe13c9ee3dc75d15de7672a120918bde60d770d642c6c1e97865bc1d144e35de", kill_on_drop: false }` [INFO] [stdout] fe13c9ee3dc75d15de7672a120918bde60d770d642c6c1e97865bc1d144e35de [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d13792f15d076828c90be3dd7827d9cde3aace74f32aee0c98dcd371f4416b62 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d13792f15d076828c90be3dd7827d9cde3aace74f32aee0c98dcd371f4416b62", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-5eb059a8ee4e4ade/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-a3ba68e155e4bde5/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-a3ba68e155e4bde5/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55d94f194f30 - std::backtrace_rs::backtrace::libunwind::trace::hfe3b1cace85e87d8 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55d94f194f30 - std::backtrace_rs::backtrace::trace_unsynchronized::h542330af06479043 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55d94f194f30 - std::sys_common::backtrace::_print_fmt::h6b88726367858985 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55d94f194f30 - ::fmt::hcd76ce6b485adbea [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55d94f1b17ef - core::fmt::write::h127419eb46f2ecc9 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/core/src/fmt/mod.rs:1092:17 [INFO] [stderr] 5: 0x55d94f191e72 - std::io::Write::write_fmt::h0facb64ef2e7f5d8 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/io/mod.rs:1567:15 [INFO] [stderr] 6: 0x55d94f197515 - std::sys_common::backtrace::_print::h7bf1633ea5421f7b [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55d94f197515 - std::sys_common::backtrace::print::h5cc4d09049928ba5 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55d94f197515 - std::panicking::default_hook::{{closure}}::h9e84dc005bfc9fc7 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55d94f196fc3 - std::panicking::default_hook::h123278a03b1f796b [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55d94f197b1d - std::panicking::rust_panic_with_hook::h4040631aa6c7bc27 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55d94f1976b7 - std::panicking::begin_panic_handler::{{closure}}::h02a17b22ac092d08 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:497:13 [INFO] [stderr] 12: 0x55d94f1953ec - std::sys_common::backtrace::__rust_end_short_backtrace::h6063b024443b5852 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55d94f197619 - rust_begin_unwind [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x55d94f11bf2b - std::panicking::begin_panic_fmt::h10b51f96d6207ff1 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:435:5 [INFO] [stderr] 15: 0x55d94f12a7dc - cmake::fail::heb59e71b364b9866 [INFO] [stderr] 16: 0x55d94f12a167 - cmake::run::hb3f957c1a84fbf1d [INFO] [stderr] 17: 0x55d94f125d4a - cmake::Config::build::hd5a507cf9ad1507b [INFO] [stderr] 18: 0x55d94f120373 - build_script_build::main::h91d7b649096c1e10 [INFO] [stderr] 19: 0x55d94f121546 - core::ops::function::FnOnce::call_once::h680e62a17bf63ca3 [INFO] [stderr] 20: 0x55d94f121499 - std::sys_common::backtrace::__rust_begin_short_backtrace::h3405897513574147 [INFO] [stderr] 21: 0x55d94f122f7c - std::rt::lang_start::{{closure}}::h5b69ea32b8bb9d58 [INFO] [stderr] 22: 0x55d94f197f1a - core::ops::function::impls:: for &F>::call_once::h3695a3fbbe44c001 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55d94f197f1a - std::panicking::try::do_call::he9f4b5f706c7e58d [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:379:40 [INFO] [stderr] 24: 0x55d94f197f1a - std::panicking::try::h789d448ccf87fe6d [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:343:19 [INFO] [stderr] 25: 0x55d94f197f1a - std::panic::catch_unwind::h7a6b31f16004913a [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panic.rs:431:14 [INFO] [stderr] 26: 0x55d94f197f1a - std::rt::lang_start_internal::h80897b41b254b288 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x55d94f122f61 - std::rt::lang_start::h1882c1f9a202cd82 [INFO] [stderr] 28: 0x55d94f120563 - main [INFO] [stderr] 29: 0x7f9fad1190b3 - __libc_start_main [INFO] [stderr] 30: 0x55d94f11ca6e - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "d13792f15d076828c90be3dd7827d9cde3aace74f32aee0c98dcd371f4416b62", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d13792f15d076828c90be3dd7827d9cde3aace74f32aee0c98dcd371f4416b62", kill_on_drop: false }` [INFO] [stdout] d13792f15d076828c90be3dd7827d9cde3aace74f32aee0c98dcd371f4416b62