[INFO] fetching crate d4-hts 0.1.16... [INFO] checking d4-hts-0.1.16 against try#b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b for pr-82781 [INFO] extracting crate d4-hts 0.1.16 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate d4-hts 0.1.16 on toolchain b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.1.16 [INFO] finished tweaking crates.io crate d4-hts 0.1.16 [INFO] tweaked toml for crates.io crate d4-hts 0.1.16 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e161365f8ac5b4f55eba71351c7261f8e718819dc817125f6cb3b8ea1d821636 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e161365f8ac5b4f55eba71351c7261f8e718819dc817125f6cb3b8ea1d821636", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e161365f8ac5b4f55eba71351c7261f8e718819dc817125f6cb3b8ea1d821636", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e161365f8ac5b4f55eba71351c7261f8e718819dc817125f6cb3b8ea1d821636", kill_on_drop: false }` [INFO] [stdout] e161365f8ac5b4f55eba71351c7261f8e718819dc817125f6cb3b8ea1d821636 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 31566a5199c25fe884787bd7c4c8bea5df718af1d8a258bd53cc69b119630a03 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "31566a5199c25fe884787bd7c4c8bea5df718af1d8a258bd53cc69b119630a03", kill_on_drop: false }` [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clang-sys v1.1.1 [INFO] [stderr] Compiling regex v1.4.5 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling d4-hts v0.1.16 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.16 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-b9527defc7269a92/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-7da02d0b27da6295/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-7da02d0b27da6295/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e1f5913660 - std::backtrace_rs::backtrace::libunwind::trace::hfe3b1cace85e87d8 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55e1f5913660 - std::backtrace_rs::backtrace::trace_unsynchronized::h542330af06479043 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55e1f5913660 - std::sys_common::backtrace::_print_fmt::h6b88726367858985 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55e1f5913660 - ::fmt::hcd76ce6b485adbea [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55e1f5934def - core::fmt::write::h127419eb46f2ecc9 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/core/src/fmt/mod.rs:1092:17 [INFO] [stderr] 5: 0x55e1f5910432 - std::io::Write::write_fmt::h0facb64ef2e7f5d8 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/io/mod.rs:1567:15 [INFO] [stderr] 6: 0x55e1f5915825 - std::sys_common::backtrace::_print::h7bf1633ea5421f7b [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55e1f5915825 - std::sys_common::backtrace::print::h5cc4d09049928ba5 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55e1f5915825 - std::panicking::default_hook::{{closure}}::h9e84dc005bfc9fc7 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55e1f59152d3 - std::panicking::default_hook::h123278a03b1f796b [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55e1f5915e2d - std::panicking::rust_panic_with_hook::h4040631aa6c7bc27 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55e1f5915997 - std::panicking::begin_panic_handler::{{closure}}::h02a17b22ac092d08 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x55e1f5913b1c - std::sys_common::backtrace::__rust_end_short_backtrace::h6063b024443b5852 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55e1f5915929 - rust_begin_unwind [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x55e1f53ba8f1 - core::panicking::panic_fmt::h5322a082d19786c3 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55e1f53ba83d - core::panicking::panic::haebb15b6842d6229 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55e1f53bd9e2 - build_script_build::build_own_htslib::hc9cd18c865018177 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:34:5 [INFO] [stderr] 17: 0x55e1f53bdefe - build_script_build::main::h7a1e2ba0bf392352 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:66:9 [INFO] [stderr] 18: 0x55e1f53bbd5b - core::ops::function::FnOnce::call_once::h96f16948e0590e73 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55e1f53bbaee - std::sys_common::backtrace::__rust_begin_short_backtrace::hee43fb1cef7a46eb [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55e1f53bcf41 - std::rt::lang_start::{{closure}}::hade9560fda5ec3fd [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x55e1f591622a - core::ops::function::impls:: for &F>::call_once::h3695a3fbbe44c001 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55e1f591622a - std::panicking::try::do_call::he9f4b5f706c7e58d [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x55e1f591622a - std::panicking::try::h789d448ccf87fe6d [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x55e1f591622a - std::panic::catch_unwind::h7a6b31f16004913a [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/panic.rs:431:14 [INFO] [stderr] 25: 0x55e1f591622a - std::rt::lang_start_internal::h80897b41b254b288 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x55e1f53bcf20 - std::rt::lang_start::h7003d2cd7fc7a0a9 [INFO] [stderr] at /rustc/b09a3e9a7a0ff7efb269ec0c13dcc0fd3cedcf6b/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x55e1f53be52c - main [INFO] [stderr] 28: 0x7fe96cad90b3 - __libc_start_main [INFO] [stderr] 29: 0x55e1f53baffe - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "31566a5199c25fe884787bd7c4c8bea5df718af1d8a258bd53cc69b119630a03", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "31566a5199c25fe884787bd7c4c8bea5df718af1d8a258bd53cc69b119630a03", kill_on_drop: false }` [INFO] [stdout] 31566a5199c25fe884787bd7c4c8bea5df718af1d8a258bd53cc69b119630a03