[INFO] fetching crate netcdf-src 0.1.3... [INFO] checking netcdf-src-0.1.3 against master#195ad4830e11a544391abe296b146450dea8411b for pr-82781 [INFO] extracting crate netcdf-src 0.1.3 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate netcdf-src 0.1.3 on toolchain 195ad4830e11a544391abe296b146450dea8411b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+195ad4830e11a544391abe296b146450dea8411b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-src 0.1.3 [INFO] finished tweaking crates.io crate netcdf-src 0.1.3 [INFO] tweaked toml for crates.io crate netcdf-src 0.1.3 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+195ad4830e11a544391abe296b146450dea8411b" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+195ad4830e11a544391abe296b146450dea8411b" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+195ad4830e11a544391abe296b146450dea8411b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6e2be3ea2188b81945319dabe0f8c5d21a8eacfec511762e75abaf221aebc887 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6e2be3ea2188b81945319dabe0f8c5d21a8eacfec511762e75abaf221aebc887", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6e2be3ea2188b81945319dabe0f8c5d21a8eacfec511762e75abaf221aebc887", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6e2be3ea2188b81945319dabe0f8c5d21a8eacfec511762e75abaf221aebc887", kill_on_drop: false }` [INFO] [stdout] 6e2be3ea2188b81945319dabe0f8c5d21a8eacfec511762e75abaf221aebc887 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+195ad4830e11a544391abe296b146450dea8411b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 38e7c42cbeed9303fbe7ff64112d3f91bb9567cf00da5a41b9be8db5d742683d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "38e7c42cbeed9303fbe7ff64112d3f91bb9567cf00da5a41b9be8db5d742683d", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling regex-syntax v0.6.23 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.89 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling hdf5-src v0.7.1 [INFO] [stderr] Compiling netcdf-src v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Compiling regex v1.4.5 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-1091a1e2622bedc8/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560764e1f210 - std::backtrace_rs::backtrace::libunwind::trace::hfe3b1cace85e87d8 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x560764e1f210 - std::backtrace_rs::backtrace::trace_unsynchronized::h542330af06479043 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x560764e1f210 - std::sys_common::backtrace::_print_fmt::h6b88726367858985 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x560764e1f210 - ::fmt::hcd76ce6b485adbea [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x560764e3a26f - core::fmt::write::h127419eb46f2ecc9 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/core/src/fmt/mod.rs:1092:17 [INFO] [stderr] 5: 0x560764e1c582 - std::io::Write::write_fmt::h0facb64ef2e7f5d8 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/io/mod.rs:1567:15 [INFO] [stderr] 6: 0x560764e211d5 - std::sys_common::backtrace::_print::h7bf1633ea5421f7b [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x560764e211d5 - std::sys_common::backtrace::print::h5cc4d09049928ba5 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x560764e211d5 - std::panicking::default_hook::{{closure}}::h9e84dc005bfc9fc7 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x560764e20c83 - std::panicking::default_hook::h123278a03b1f796b [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x560764e217dd - std::panicking::rust_panic_with_hook::h4040631aa6c7bc27 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x560764d62753 - std::panicking::begin_panic::{{closure}}::h593583530dca554c [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x560764d7f2e9 - std::sys_common::backtrace::__rust_end_short_backtrace::h5f2116d9e40aa1a9 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x560764d62689 - std::panicking::begin_panic::h555a032a0b929e39 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x560764c19099 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h1f6a4ade560966a8 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x560764c1a891 - build_script_build::main::had65946c0d291b86 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x560764c2037b - core::ops::function::FnOnce::call_once::h33d7107477807124 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x560764c2666e - std::sys_common::backtrace::__rust_begin_short_backtrace::h9c7f7f1ce4eace69 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x560764c246d1 - std::rt::lang_start::{{closure}}::ha60ea698c449cb90 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x560764e21bda - core::ops::function::impls:: for &F>::call_once::h3695a3fbbe44c001 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x560764e21bda - std::panicking::try::do_call::he9f4b5f706c7e58d [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x560764e21bda - std::panicking::try::h789d448ccf87fe6d [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x560764e21bda - std::panic::catch_unwind::h7a6b31f16004913a [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x560764e21bda - std::rt::lang_start_internal::h80897b41b254b288 [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x560764c246b0 - std::rt::lang_start::he27e65abc35229eb [INFO] [stderr] at /rustc/195ad4830e11a544391abe296b146450dea8411b/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x560764c1bd8c - main [INFO] [stderr] 26: 0x7f03d99880b3 - __libc_start_main [INFO] [stderr] 27: 0x560764c13eae - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "38e7c42cbeed9303fbe7ff64112d3f91bb9567cf00da5a41b9be8db5d742683d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "38e7c42cbeed9303fbe7ff64112d3f91bb9567cf00da5a41b9be8db5d742683d", kill_on_drop: false }` [INFO] [stdout] 38e7c42cbeed9303fbe7ff64112d3f91bb9567cf00da5a41b9be8db5d742683d