[INFO] cloning repository https://github.com/amsesk/protein2contig
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/amsesk/protein2contig" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d2c1b32d69b4e995f0f4fa3bfc6735cd60222d8d
[INFO] checking amsesk/protein2contig against master#195ad4830e11a544391abe296b146450dea8411b for pr-82781
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/amsesk/protein2contig on toolchain 195ad4830e11a544391abe296b146450dea8411b
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+195ad4830e11a544391abe296b146450dea8411b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/amsesk/protein2contig
[INFO] finished tweaking git repo https://github.com/amsesk/protein2contig
[INFO] tweaked toml for git repo https://github.com/amsesk/protein2contig written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate git repo https://github.com/amsesk/protein2contig already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+195ad4830e11a544391abe296b146450dea8411b" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+195ad4830e11a544391abe296b146450dea8411b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 4930f1957fafb5c150652a4fc49672e78d7400f53a4af205f933f6369ef1fb43
[INFO] running `Command { std: "docker" "start" "-a" "4930f1957fafb5c150652a4fc49672e78d7400f53a4af205f933f6369ef1fb43", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4930f1957fafb5c150652a4fc49672e78d7400f53a4af205f933f6369ef1fb43", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4930f1957fafb5c150652a4fc49672e78d7400f53a4af205f933f6369ef1fb43", kill_on_drop: false }`
[INFO] [stdout] 4930f1957fafb5c150652a4fc49672e78d7400f53a4af205f933f6369ef1fb43
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+195ad4830e11a544391abe296b146450dea8411b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a6e8fdca74c03039898e558c84784b90e8bb44e5eaf28a42a9733e915513498e
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "a6e8fdca74c03039898e558c84784b90e8bb44e5eaf28a42a9733e915513498e", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.20
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling serde v1.0.110
[INFO] [stderr]    Compiling libc v0.2.70
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling version_check v0.9.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]    Compiling bio v0.30.1-alpha.0 (https://github.com/rust-bio/rust-bio#0fe46244)
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking os_str_bytes v2.3.1
[INFO] [stderr]     Checking fnv v1.0.6
[INFO] [stderr]     Checking termcolor v1.1.0
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling indexmap v1.3.2
[INFO] [stderr]     Checking aho-corasick v0.7.10
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling proc-macro-error-attr v0.4.12
[INFO] [stderr]    Compiling proc-macro-error v0.4.12
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking getrandom v0.1.14
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking regex v1.3.7
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.110
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.1
[INFO] [stderr]     Checking snafu v0.6.8
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bio-types v0.6.0
[INFO] [stderr]     Checking clap v3.0.0-beta.1
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking protein2contig v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 26s
[INFO] running `Command { std: "docker" "inspect" "a6e8fdca74c03039898e558c84784b90e8bb44e5eaf28a42a9733e915513498e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a6e8fdca74c03039898e558c84784b90e8bb44e5eaf28a42a9733e915513498e", kill_on_drop: false }`
[INFO] [stdout] a6e8fdca74c03039898e558c84784b90e8bb44e5eaf28a42a9733e915513498e